Variant report

Variant	rs10262102
Chromosome Location	chr7:69580253-69580254
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10081305	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10085908	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10156142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1017113	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10215914	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10216186	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10227424	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10228786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10229336	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10234106	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10234121	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10235098	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10238049	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245749	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10248401	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248606	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10251433	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10254871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10256093	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10258846	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10259028	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10266802	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276322	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10276912	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10278001	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10279669	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10281537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10452739	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10950193	0.88[EUR][1000 genomes]
rs11762487	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11763426	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11764141	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11764397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764911	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11766424	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11766980	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11768151	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769390	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11770241	0.88[EUR][1000 genomes]
rs11770380	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11770466	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11770695	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770963	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11771768	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12113743	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12333653	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13362851	0.80[AMR][1000 genomes]
rs13362865	0.80[AMR][1000 genomes]
rs13437638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141032	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17141168	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361825	0.84[EUR][1000 genomes]
rs28393394	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28433534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28464032	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28489338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28496072	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28502437	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28582872	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28617759	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28630917	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28657792	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866276	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28864527	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35862187	0.87[EUR][1000 genomes]
rs4364526	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4557583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56063609	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56272534	0.95[ASN][1000 genomes]
rs56376205	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56388246	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56405888	0.88[EUR][1000 genomes]
rs56410838	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56999082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57370717	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60847182	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61370051	0.85[AMR][1000 genomes]
rs6944701	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6948174	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6950849	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6958714	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6961682	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6967512	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6968426	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6976263	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6978818	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73160193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73168740	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73168747	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73168758	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73171731	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73173531	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73173550	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7777243	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7780665	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7780835	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7781664	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7796273	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7797662	0.93[EUR][1000 genomes]
rs7798890	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7805165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806413	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9690738	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9690769	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69565400-69585800	Weak transcription	Fetal Brain Female	brain
2	chr7:69576200-69585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:69577800-69581400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:69578600-69583600	Weak transcription	Fetal Lung	lung
5	chr7:69578800-69591800	Weak transcription	Ovary	ovary
6	chr7:69579000-69581000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:69580000-69580400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:69580000-69580600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:69580000-69582000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr7:69580000-69582000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr7:69580000-69582400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr7:69580000-69584800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:69580200-69581200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:69580200-69581400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr7:69580200-69582000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:69580200-69585600	Weak transcription	Adipose Nuclei	Adipose

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