Variant report

Variant	rs56272534
Chromosome Location	chr7:69525655-69525656
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10081305	0.85[ASN][1000 genomes]
rs10085908	0.85[ASN][1000 genomes]
rs10156142	0.95[ASN][1000 genomes]
rs1017113	0.85[ASN][1000 genomes]
rs10227424	0.85[ASN][1000 genomes]
rs10228786	0.95[ASN][1000 genomes]
rs10234106	0.82[ASN][1000 genomes]
rs10234121	0.95[ASN][1000 genomes]
rs10238049	0.95[ASN][1000 genomes]
rs10248401	0.95[ASN][1000 genomes]
rs10248606	0.85[ASN][1000 genomes]
rs10251433	0.87[ASN][1000 genomes]
rs10254871	0.95[ASN][1000 genomes]
rs10256093	0.85[ASN][1000 genomes]
rs10259028	0.85[ASN][1000 genomes]
rs10262102	0.95[ASN][1000 genomes]
rs10266802	0.95[ASN][1000 genomes]
rs10276322	0.85[ASN][1000 genomes]
rs10281537	0.95[ASN][1000 genomes]
rs11764141	0.85[ASN][1000 genomes]
rs11764397	0.95[ASN][1000 genomes]
rs11764911	0.85[ASN][1000 genomes]
rs11766424	0.85[ASN][1000 genomes]
rs11766980	0.85[ASN][1000 genomes]
rs11768151	0.95[ASN][1000 genomes]
rs11769390	0.85[ASN][1000 genomes]
rs11770380	0.85[ASN][1000 genomes]
rs11770695	0.95[ASN][1000 genomes]
rs11771768	0.85[ASN][1000 genomes]
rs13437638	0.95[ASN][1000 genomes]
rs17141168	0.95[ASN][1000 genomes]
rs17141181	0.95[ASN][1000 genomes]
rs17141191	0.95[ASN][1000 genomes]
rs17141193	0.95[ASN][1000 genomes]
rs28433534	0.95[ASN][1000 genomes]
rs28464032	0.85[ASN][1000 genomes]
rs28489338	0.95[ASN][1000 genomes]
rs28582872	0.85[ASN][1000 genomes]
rs28630917	0.85[ASN][1000 genomes]
rs28657792	0.95[ASN][1000 genomes]
rs4364526	0.85[ASN][1000 genomes]
rs4557583	0.82[ASN][1000 genomes]
rs56376205	0.85[ASN][1000 genomes]
rs56999082	0.95[ASN][1000 genomes]
rs57000704	1.00[EUR][1000 genomes]
rs57682760	1.00[EUR][1000 genomes]
rs6944701	0.81[ASN][1000 genomes]
rs6948174	0.92[ASN][1000 genomes]
rs6961682	0.85[ASN][1000 genomes]
rs6967512	0.85[ASN][1000 genomes]
rs6976263	0.85[ASN][1000 genomes]
rs73160193	0.85[ASN][1000 genomes]
rs73171731	0.85[ASN][1000 genomes]
rs7798890	0.85[ASN][1000 genomes]
rs7805165	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1022932	chr7:69496659-69564369	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv538925	chr7:69496659-69564369	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv1034817	chr7:69507871-69578892	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv538926	chr7:69507871-69578892	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1028975	chr7:69513266-69578892	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69513800-69525800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:69517800-69527800	Weak transcription	Psoas Muscle	Psoas
3	chr7:69517800-69533600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr7:69518000-69527800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:69519600-69528600	Weak transcription	Fetal Stomach	stomach
6	chr7:69519800-69528600	Weak transcription	Fetal Lung	lung
7	chr7:69520000-69527800	Weak transcription	Fetal Brain Female	brain
8	chr7:69520600-69525800	Weak transcription	Adipose Nuclei	Adipose
9	chr7:69522000-69528600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:69522400-69528600	Weak transcription	Fetal Heart	heart
11	chr7:69523200-69528400	Weak transcription	Brain Germinal Matrix	brain
12	chr7:69524800-69526000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:69525200-69526000	Enhancers	Fetal Intestine Large	intestine
14	chr7:69525200-69526200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr7:69525200-69526200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr7:69525200-69526200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:69525200-69526200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:69525200-69526400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr7:69525400-69526000	Enhancers	Fetal Thymus	thymus
20	chr7:69525400-69526200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr7:69525600-69526000	Enhancers	Primary T cells from cord blood	blood
22	chr7:69525600-69526000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr7:69525600-69526000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:69525600-69526000	Enhancers	Left Ventricle	heart
25	chr7:69525600-69526200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr7:69525600-69526200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:69525600-69526200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr7:69525600-69526400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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