Variant report

Variant	rs28582872
Chromosome Location	chr7:69642358-69642359
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10081305	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10085908	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10156142	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1017113	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10215914	0.82[EUR][1000 genomes]
rs10216186	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10227424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10228786	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10234106	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10234121	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10235098	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10238049	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10245749	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10248401	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10248606	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10251433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10254871	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10256093	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258846	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10259028	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10262102	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10266802	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10276322	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10276912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10278001	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10281537	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10452739	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11762035	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11762487	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11763426	0.82[EUR][1000 genomes]
rs11764141	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764397	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11764782	0.84[EUR][1000 genomes]
rs11764911	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11766424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766980	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11768151	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11769390	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11770380	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11770466	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11770695	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11770963	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11771768	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12113743	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12333653	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13362851	0.80[AMR][1000 genomes]
rs13362865	0.80[AMR][1000 genomes]
rs13437638	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141032	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17141168	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141181	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141191	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17141193	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28393394	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28433534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28464032	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28496072	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28502437	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28617759	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28630917	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28657792	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2866276	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28864527	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35862187	0.93[EUR][1000 genomes]
rs4364526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557583	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56063609	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56272534	0.85[ASN][1000 genomes]
rs56376205	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388246	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56405888	0.82[EUR][1000 genomes]
rs56410838	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56999082	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57370717	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60847182	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6944701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6948174	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6950849	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6958714	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6961682	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6967512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968426	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6976263	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978818	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73160193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73168758	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73171731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73173531	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73173550	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7780665	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7796273	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7797662	0.87[EUR][1000 genomes]
rs7798890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805165	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7806413	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9690738	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69629200-69644400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:69637400-69642400	Weak transcription	Osteobl	bone
3	chr7:69639800-69643400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:69641400-69645000	Enhancers	Dnd41	blood
5	chr7:69641600-69642400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:69641800-69644600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:69642000-69642600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr7:69642000-69644600	Enhancers	NHDF-Ad	bronchial
9	chr7:69642000-69645000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:69642200-69642400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr7:69642200-69642400	Bivalent Enhancer	Primary T cells from cord blood	blood
12	chr7:69642200-69642600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
13	chr7:69642200-69643600	Enhancers	GM12878-XiMat	blood
14	chr7:69642200-69644000	Enhancers	Primary B cells from peripheral blood	blood
15	chr7:69642200-69644200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:69642200-69644800	Enhancers	HSMM	muscle
17	chr7:69642200-69645800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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