Variant report

Variant	rs73173550
Chromosome Location	chr7:69812631-69812632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10081305	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10085908	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10156142	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10227424	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10228786	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10234106	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238049	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10248606	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10251433	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10254871	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10256093	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10262102	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10276912	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10281537	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11762035	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11764141	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11764397	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11764782	0.87[EUR][1000 genomes]
rs11766424	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11770380	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11770466	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11770963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11773411	0.81[AMR][1000 genomes]
rs12112891	0.81[AMR][1000 genomes]
rs12113743	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13437638	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17141191	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17141193	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28433534	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28464032	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28489338	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28582872	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28617759	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28657792	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2866276	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34944443	0.81[AMR][1000 genomes]
rs35862187	0.84[EUR][1000 genomes]
rs4364526	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4557583	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55946510	0.81[AMR][1000 genomes]
rs56063609	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56376205	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56388246	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56410838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56669413	0.81[AMR][1000 genomes]
rs56999082	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57370717	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58873380	0.82[ASN][1000 genomes]
rs60847182	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6944701	0.91[EUR][1000 genomes]
rs6950849	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6967512	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6976263	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73160193	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73171731	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73173531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73173577	0.81[AMR][1000 genomes]
rs73173581	0.81[AMR][1000 genomes]
rs73173583	0.81[AMR][1000 genomes]
rs7780665	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7796273	0.84[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7798890	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7805165	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1028870	chr7:69742438-69879231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69803000-69819600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:69806200-69817800	Weak transcription	Fetal Lung	lung
3	chr7:69809200-69818400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:69809400-69817000	Weak transcription	Fetal Stomach	stomach
5	chr7:69811000-69813200	Enhancers	Primary T cells from cord blood	blood
6	chr7:69811400-69817800	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:69812200-69813600	Enhancers	GM12878-XiMat	blood
8	chr7:69812400-69812800	Enhancers	Fetal Thymus	thymus
9	chr7:69812400-69813400	Enhancers	Primary B cells from peripheral blood	blood

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