Variant report

Variant	rs11762035
Chromosome Location	chr7:69768410-69768411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10081305	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10085908	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10227424	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10234106	0.83[EUR][1000 genomes]
rs10238049	0.83[EUR][1000 genomes]
rs10248606	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10256093	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10276912	0.83[EUR][1000 genomes]
rs11764141	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11766424	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11770380	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11770466	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11770963	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12113743	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28464032	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28582872	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28617759	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2866276	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4364526	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56063609	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56376205	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56388246	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56410838	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57370717	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60847182	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6944701	0.83[EUR][1000 genomes]
rs6950849	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6967512	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6976263	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73160193	0.80[ASN][1000 genomes]
rs73171731	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73173531	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73173550	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7780665	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7796273	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7798890	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv607431	chr7:69699074-69828729	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1028870	chr7:69742438-69879231	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69762800-69774200	Enhancers	Primary T cells from cord blood	blood
2	chr7:69764800-69768600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:69765600-69769000	Enhancers	Dnd41	blood
4	chr7:69766000-69769200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:69767400-69769800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr7:69767400-69777600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr7:69767600-69768600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:69767600-69768600	Enhancers	Fetal Brain Male	brain
9	chr7:69767600-69768800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr7:69767800-69769600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr7:69768000-69769000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:69768000-69769200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr7:69768000-69769600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:69768000-69770000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:69768000-69770000	Enhancers	GM12878-XiMat	blood
16	chr7:69768200-69768800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:69768200-69769200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:69768200-69769200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr7:69768200-69769600	Enhancers	Primary T cells fromperipheralblood	blood
20	chr7:69768400-69769000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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