Variant report

Variant	rs7797662
Chromosome Location	chr7:69477850-69477851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69472277..69474938-chr7:69476537..69478191,2	K562	blood:

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10081305	0.87[EUR][1000 genomes]
rs10085908	0.87[EUR][1000 genomes]
rs10156142	0.93[EUR][1000 genomes]
rs1017113	0.91[EUR][1000 genomes]
rs10215914	0.82[EUR][1000 genomes]
rs10216186	0.84[EUR][1000 genomes]
rs10227424	0.87[EUR][1000 genomes]
rs10228786	0.93[EUR][1000 genomes]
rs10229336	0.84[EUR][1000 genomes]
rs10234106	0.87[EUR][1000 genomes]
rs10234121	0.91[EUR][1000 genomes]
rs10235098	0.84[EUR][1000 genomes]
rs10238049	0.87[EUR][1000 genomes]
rs10245749	0.84[EUR][1000 genomes]
rs10248401	0.93[EUR][1000 genomes]
rs10248606	0.87[EUR][1000 genomes]
rs10251433	0.84[EUR][1000 genomes]
rs10254871	0.93[EUR][1000 genomes]
rs10256093	0.87[EUR][1000 genomes]
rs10258846	0.84[EUR][1000 genomes]
rs10259028	0.91[EUR][1000 genomes]
rs10262102	0.93[EUR][1000 genomes]
rs10266802	0.91[EUR][1000 genomes]
rs10276322	0.91[EUR][1000 genomes]
rs10276912	0.87[EUR][1000 genomes]
rs10278001	0.84[EUR][1000 genomes]
rs10281537	0.93[EUR][1000 genomes]
rs10452739	0.84[EUR][1000 genomes]
rs10950193	0.82[EUR][1000 genomes]
rs11762487	0.84[EUR][1000 genomes]
rs11763426	0.82[EUR][1000 genomes]
rs11764141	0.87[EUR][1000 genomes]
rs11764397	0.93[EUR][1000 genomes]
rs11764911	0.91[EUR][1000 genomes]
rs11766424	0.87[EUR][1000 genomes]
rs11766980	0.91[EUR][1000 genomes]
rs11768151	0.91[EUR][1000 genomes]
rs11769390	0.91[EUR][1000 genomes]
rs11770241	0.82[EUR][1000 genomes]
rs11770380	0.87[EUR][1000 genomes]
rs11770466	0.81[EUR][1000 genomes]
rs11770695	0.91[EUR][1000 genomes]
rs11771768	0.91[EUR][1000 genomes]
rs12333653	0.84[EUR][1000 genomes]
rs13437638	0.93[EUR][1000 genomes]
rs17141032	0.84[EUR][1000 genomes]
rs17141168	0.91[EUR][1000 genomes]
rs17141181	0.93[EUR][1000 genomes]
rs17141191	0.93[EUR][1000 genomes]
rs17141193	0.93[EUR][1000 genomes]
rs17353920	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17361825	0.90[EUR][1000 genomes]
rs17457910	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458713	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052124	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28393394	0.84[EUR][1000 genomes]
rs28433534	0.93[EUR][1000 genomes]
rs28464032	0.87[EUR][1000 genomes]
rs28489338	0.93[EUR][1000 genomes]
rs28496072	0.84[EUR][1000 genomes]
rs28502437	0.84[EUR][1000 genomes]
rs28582872	0.87[EUR][1000 genomes]
rs28630917	0.91[EUR][1000 genomes]
rs28657792	0.93[EUR][1000 genomes]
rs28864527	0.84[EUR][1000 genomes]
rs35862187	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4364526	0.87[EUR][1000 genomes]
rs4557583	0.93[EUR][1000 genomes]
rs56376205	0.87[EUR][1000 genomes]
rs56405888	0.82[EUR][1000 genomes]
rs56999082	0.93[EUR][1000 genomes]
rs6944701	0.87[EUR][1000 genomes]
rs6948174	0.91[EUR][1000 genomes]
rs6950849	0.81[EUR][1000 genomes]
rs6958714	0.84[EUR][1000 genomes]
rs6961682	0.91[EUR][1000 genomes]
rs6967512	0.87[EUR][1000 genomes]
rs6968426	0.84[EUR][1000 genomes]
rs6976263	0.87[EUR][1000 genomes]
rs6978818	0.84[EUR][1000 genomes]
rs73160193	0.93[EUR][1000 genomes]
rs73168747	0.84[EUR][1000 genomes]
rs73168758	0.84[EUR][1000 genomes]
rs73171731	0.87[EUR][1000 genomes]
rs7777243	0.81[EUR][1000 genomes]
rs7780665	0.81[EUR][1000 genomes]
rs7781664	0.84[EUR][1000 genomes]
rs7796273	0.81[EUR][1000 genomes]
rs7798890	0.87[EUR][1000 genomes]
rs7805165	0.93[EUR][1000 genomes]
rs7806413	0.93[EUR][1000 genomes]
rs9690738	0.84[EUR][1000 genomes]
rs9690769	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1028705	chr7:69453983-69524628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69471800-69479200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:69472000-69478800	Weak transcription	Primary B cells from cord blood	blood
3	chr7:69472200-69479600	Weak transcription	Fetal Stomach	stomach
4	chr7:69472200-69479600	Weak transcription	GM12878-XiMat	blood
5	chr7:69472600-69479600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:69472800-69478400	Weak transcription	Dnd41	blood
7	chr7:69476000-69478000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:69476200-69478200	Weak transcription	Thymus	Thymus
9	chr7:69476600-69479000	Enhancers	Fetal Thymus	thymus
10	chr7:69476800-69478000	Enhancers	Fetal Heart	heart
11	chr7:69476800-69478200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:69477000-69479400	Weak transcription	Fetal Lung	lung
13	chr7:69477200-69481400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr7:69477200-69482400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:69477200-69490400	Weak transcription	Left Ventricle	heart
16	chr7:69477200-69507600	Weak transcription	Right Atrium	heart
17	chr7:69477400-69478400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:69477400-69479400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:69477600-69478800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:69477600-69480000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr7:69477600-69480200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr7:69477800-69480400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr7:69477800-69482200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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