Variant report

Variant	rs13362865
Chromosome Location	chr7:69415799-69415800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69407235..69410156-chr7:69414397..69415945,2	K562	blood:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10081305	0.80[AMR][1000 genomes]
rs10085908	0.80[AMR][1000 genomes]
rs10156142	0.80[AMR][1000 genomes]
rs1017113	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10215914	0.95[ASN][1000 genomes]
rs10216186	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10228786	0.80[AMR][1000 genomes]
rs10229336	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10234121	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10235098	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10245749	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10248401	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10248606	0.80[AMR][1000 genomes]
rs10251433	0.80[AMR][1000 genomes]
rs10254871	0.80[AMR][1000 genomes]
rs10256093	0.80[AMR][1000 genomes]
rs10258846	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10259028	0.85[ASN][1000 genomes]
rs10262102	0.80[AMR][1000 genomes]
rs10272781	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10276322	0.85[ASN][1000 genomes]
rs10276912	0.80[AMR][1000 genomes]
rs10278001	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10281537	0.80[AMR][1000 genomes]
rs10452739	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10950193	0.87[ASN][1000 genomes]
rs11762487	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11763426	0.95[ASN][1000 genomes]
rs11764141	0.80[AMR][1000 genomes]
rs11764397	0.80[AMR][1000 genomes]
rs11764911	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11766424	0.80[AMR][1000 genomes]
rs11766980	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11768151	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11769390	0.85[ASN][1000 genomes]
rs11770241	0.87[ASN][1000 genomes]
rs11770380	0.80[AMR][1000 genomes]
rs11770695	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11771768	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12333653	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13362851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437638	0.80[AMR][1000 genomes]
rs17141032	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17141181	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs17141191	0.80[AMR][1000 genomes]
rs17141193	0.80[AMR][1000 genomes]
rs28393394	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28433534	0.80[AMR][1000 genomes]
rs28464032	0.80[AMR][1000 genomes]
rs28489338	0.80[AMR][1000 genomes]
rs28496072	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28502437	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs28582872	0.80[AMR][1000 genomes]
rs28630917	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28657792	0.80[AMR][1000 genomes]
rs28864527	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs34080361	0.87[ASN][1000 genomes]
rs4364526	0.80[AMR][1000 genomes]
rs4557583	0.80[AMR][1000 genomes]
rs56376205	0.80[AMR][1000 genomes]
rs56405888	0.88[ASN][1000 genomes]
rs56999082	0.80[AMR][1000 genomes]
rs61370051	0.82[ASN][1000 genomes]
rs6944701	0.80[AMR][1000 genomes]
rs6947326	0.87[ASN][1000 genomes]
rs6958714	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6961682	0.85[ASN][1000 genomes]
rs6962237	0.83[ASN][1000 genomes]
rs6967512	0.80[AMR][1000 genomes]
rs6968426	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6976263	0.80[AMR][1000 genomes]
rs6978818	0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs719294	0.87[ASN][1000 genomes]
rs73160193	0.80[AMR][1000 genomes]
rs73168739	0.87[ASN][1000 genomes]
rs73168740	0.87[ASN][1000 genomes]
rs73168747	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73168758	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73171731	0.80[AMR][1000 genomes]
rs7777243	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7781664	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7805165	0.80[AMR][1000 genomes]
rs7806413	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs917718	0.87[ASN][1000 genomes]
rs9690738	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9690769	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv916265	chr7:69367265-69433076	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031593	chr7:69367316-69445052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv538921	chr7:69367316-69445052	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69391800-69417000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69404600-69427800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:69406800-69417200	Weak transcription	Thymus	Thymus
4	chr7:69409400-69417200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:69411000-69426800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:69412200-69418000	Weak transcription	Fetal Stomach	stomach
7	chr7:69413000-69418000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:69413400-69416400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:69413400-69417200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:69413400-69417800	Weak transcription	Fetal Lung	lung
11	chr7:69414800-69423400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:69415000-69427200	Weak transcription	Fetal Kidney	kidney
13	chr7:69415200-69418000	Weak transcription	Fetal Heart	heart
14	chr7:69415600-69415800	Enhancers	Left Ventricle	heart
15	chr7:69415600-69417800	Enhancers	GM12878-XiMat	blood

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