Variant report

Variant	rs73168761
Chromosome Location	chr7:69392599-69392600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69392216..69395197-chr8:71487916..71489899,2	MCF-7	breast:
2	chr7:69382134..69383940-chr7:69390397..69392877,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1000873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234831	0.82[EUR][1000 genomes]
rs17353920	0.85[EUR][1000 genomes]
rs17366824	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17457910	0.85[EUR][1000 genomes]
rs17458187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458713	0.85[EUR][1000 genomes]
rs2052124	0.85[EUR][1000 genomes]
rs55738479	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6943884	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6945524	0.85[EUR][1000 genomes]
rs6962338	0.85[EUR][1000 genomes]
rs73160116	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73164783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1017390	chr7:69339404-69406232	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv538920	chr7:69339404-69406232	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv916265	chr7:69367265-69433076	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1031593	chr7:69367316-69445052	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv538921	chr7:69367316-69445052	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv3367869	chr7:69390916-69393114	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69377800-69402000	Weak transcription	Ovary	ovary
2	chr7:69379800-69392800	Weak transcription	Fetal Brain Male	brain
3	chr7:69380200-69396000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:69386000-69399400	Weak transcription	Fetal Kidney	kidney
5	chr7:69386200-69392800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:69387600-69409400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:69388400-69392600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:69389800-69399600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:69391200-69393400	Weak transcription	Pancreas	Pancrea
10	chr7:69391200-69398600	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:69391200-69399200	Weak transcription	Fetal Lung	lung
12	chr7:69391400-69396200	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:69391600-69399200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:69391800-69394000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:69391800-69399000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:69391800-69417000	Weak transcription	Primary B cells from cord blood	blood
17	chr7:69392400-69392600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:69392400-69392800	ZNF genes & repeats	Esophagus	oesophagus
19	chr7:69392400-69393200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:69392400-69393400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr7:69392400-69393400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:69392400-69393600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:69392400-69393600	ZNF genes & repeats	Dnd41	blood
24	chr7:69392400-69393800	ZNF genes & repeats	Fetal Intestine Small	intestine
25	chr7:69392400-69393800	ZNF genes & repeats	Fetal Stomach	stomach
26	chr7:69392400-69399400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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