Variant report

Variant	rs6943884
Chromosome Location	chr7:69585300-69585301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17366824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55738479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160116	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73168761	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73171746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69565400-69585800	Weak transcription	Fetal Brain Female	brain
2	chr7:69576200-69585400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:69578800-69591800	Weak transcription	Ovary	ovary
4	chr7:69580200-69585600	Weak transcription	Adipose Nuclei	Adipose
5	chr7:69580600-69585400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:69581200-69585600	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:69581400-69585800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:69581600-69585600	Weak transcription	Dnd41	blood
9	chr7:69581600-69585800	Weak transcription	Left Ventricle	heart
10	chr7:69582000-69585800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:69582000-69597600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:69582600-69585600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr7:69582600-69585600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:69582600-69586000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr7:69583200-69586800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:69583800-69585600	Strong transcription	Primary B cells from cord blood	blood
17	chr7:69583800-69585600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:69583800-69585600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:69584000-69585400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:69584400-69585800	Weak transcription	Fetal Lung	lung
21	chr7:69584400-69586000	Weak transcription	Brain Substantia Nigra	brain
22	chr7:69584600-69587600	Weak transcription	Fetal Intestine Small	intestine
23	chr7:69584600-69587800	Weak transcription	Fetal Stomach	stomach
24	chr7:69584800-69586600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:69584800-69586800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:69585000-69587200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:69585000-69587200	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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