Variant report

Variant	rs17366824
Chromosome Location	chr7:69608088-69608089
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69607304..69608995-chr7:69609014..69610911,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55738479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6943884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73160116	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73168761	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73171746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv916345	chr7:69520612-69784809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69598800-69613400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:69599200-69616200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:69600000-69618200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:69600000-69631000	Weak transcription	Primary B cells from cord blood	blood
5	chr7:69601000-69608400	Weak transcription	Brain Germinal Matrix	brain
6	chr7:69602800-69608600	Weak transcription	Fetal Brain Female	brain
7	chr7:69603400-69625600	Weak transcription	Fetal Brain Male	brain
8	chr7:69606600-69609000	Enhancers	Fetal Heart	heart
9	chr7:69606800-69609200	Enhancers	Fetal Lung	lung
10	chr7:69607000-69609400	Enhancers	Osteobl	bone
11	chr7:69607200-69609600	Enhancers	HSMM	muscle
12	chr7:69607400-69609200	Enhancers	NHDF-Ad	bronchial
13	chr7:69607400-69609400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:69607400-69609400	Enhancers	Fetal Stomach	stomach
15	chr7:69607400-69609600	Enhancers	HSMMtube	muscle
16	chr7:69607600-69609200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:69607600-69609400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:69607600-69610000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr7:69607800-69608200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:69607800-69608600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr7:69607800-69609400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr7:69608000-69609000	Enhancers	Adipose Nuclei	Adipose
23	chr7:69608000-69609000	Enhancers	Fetal Kidney	kidney
24	chr7:69608000-69609800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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