Variant report

Variant	rs62457202
Chromosome Location	chr7:64541473-64541474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:64541466-64541499	GM19238	blood:	n/a	n/a
2	YY1	chr7:64541270-64541536	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr7:64541253-64541966	GM15510	blood:	n/a	n/a
4	CTCF	chr7:64541420-64541570	HPAF	blood vessel:	n/a	n/a
5	MAX	chr7:64541352-64541544	K562	blood:	n/a	n/a
6	SIN3A	chr7:64541424-64541598	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr7:64541360-64541510	GM12873	blood:	n/a	n/a
8	POLR2A	chr7:64541262-64542212	SK-N-SH	brain:	n/a	n/a
9	POLR2A	chr7:64541291-64542082	GM12891	blood:	n/a	n/a
10	POLR2A	chr7:64541312-64541926	HCT-116	colon:	n/a	n/a
11	POLR2A	chr7:64541233-64542121	ProgFib	skin:	n/a	n/a
12	SP1	chr7:64541427-64542032	A549	lung:	n/a	chr7:64541683-64541695 chr7:64541685-64541694 chr7:64541657-64541678 chr7:64541683-64541695
13	SP1	chr7:64541470-64541995	A549	lung:	n/a	chr7:64541683-64541695 chr7:64541685-64541694 chr7:64541657-64541678 chr7:64541683-64541695
14	PAX5	chr7:64541371-64542154	GM12878	blood:	n/a	chr7:64541826-64541835
15	CTCF	chr7:64541400-64541550	AoAF	blood vessel:	n/a	n/a
16	CTCF	chr7:64541340-64541490	HPAF	blood vessel:	n/a	n/a
17	POLR2A	chr7:64541375-64542097	K562	blood:	n/a	n/a
18	POLR2A	chr7:64541217-64542281	MCF-7	breast:	n/a	n/a
19	POLR2A	chr7:64541288-64541967	NB4	blood:	n/a	n/a
20	MYC	chr7:64541383-64541556	GM12878	blood:	n/a	n/a
21	PAX5	chr7:64541300-64541824	GM12878	blood:	n/a	n/a
22	BHLHE40	chr7:64541415-64541499	K562	blood:	n/a	n/a
23	SP1	chr7:64541460-64541973	GM12878	blood:	n/a	chr7:64541683-64541695 chr7:64541685-64541694 chr7:64541657-64541678 chr7:64541683-64541695
24	TAF1	chr7:64541398-64541986	GM12891	blood:	n/a	n/a
25	POLR2A	chr7:64541257-64542101	GM19099	blood:	n/a	n/a
26	POLR2A	chr7:64541119-64542093	GM12878	blood:	n/a	n/a
27	YY1	chr7:64541194-64541837	SK-N-SH_RA	brain:	n/a	n/a
28	POLR2A	chr7:64541394-64541950	IMR90	lung:	n/a	n/a
29	MAZ	chr7:64541250-64541821	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr7:64541184-64541987	HepG2	liver:	n/a	n/a
31	CTCF	chr7:64541400-64541550	HBMEC	blood vessel:	n/a	n/a
32	POLR2A	chr7:64541198-64542583	GM12878	blood:	n/a	n/a
33	EBF1	chr7:64541134-64541950	GM12878	blood:	n/a	n/a
34	TAF1	chr7:64541446-64541989	GM12892	blood:	n/a	n/a
35	CTCF	chr7:64541400-64541550	GM12864	blood:	n/a	n/a
36	SP1	chr7:64541460-64542027	K562	blood:	n/a	chr7:64541683-64541695 chr7:64541685-64541694 chr7:64541657-64541678 chr7:64541683-64541695
37	POLR2A	chr7:64541173-64542248	MCF-7	breast:	n/a	n/a
38	POLR2A	chr7:64541014-64542203	H1-hESC	embryonic stem cell:	n/a	n/a
39	CTCF	chr7:64541462-64541762	GM12878	blood:	n/a	n/a
40	HEY1	chr7:64541377-64541941	HepG2	liver:	n/a	n/a
41	JUN	chr7:64541101-64541960	K562	blood:	n/a	chr7:64541666-64541675 chr7:64541718-64541731
42	CTCF	chr7:64541340-64541490	WERI-Rb-1	eye:	n/a	n/a
43	CTCF	chr7:64541360-64541510	GM12870	blood:	n/a	n/a
44	POLR2A	chr7:64541246-64542038	ECC-1	luminal epithelium:	n/a	n/a
45	POLR2A	chr7:64541363-64542073	PBDE	blood:	n/a	n/a
46	PAX5	chr7:64541349-64541942	GM12878	blood:	n/a	chr7:64541826-64541835
47	CTCF	chr7:64541340-64541490	GM12867	blood:	n/a	n/a
48	POLR2A	chr7:64541156-64542389	MCF-7	breast:	n/a	n/a
49	TAF1	chr7:64541130-64541950	HepG2	liver:	n/a	n/a
50	SIN3A	chr7:64541443-64541644	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:64541143..64541896-chr7:65235210..65235720,2	Hela-S3	cervix:
2	chr7:64541235..64542233-chr7:65235555..65236448,5	MCF-7	breast:
3	chr7:64541160..64542217-chr7:65235379..65236226,3	HCT-116	colon:
4	chr7:64540231..64542866-chr7:65234211..65237009,2	MCF-7	breast:
5	chr20:30192973..30193963-chr7:64540947..64541759,2	Hela-S3	cervix:
6	chr7:64499257..64501633-chr7:64540419..64543070,2	MCF-7	breast:
7	chr7:64541401..64541976-chr7:65235201..65235732,3	MCF-7	breast:
8	chr1:236958470..236959023-chr7:64541184..64541935,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000226002	TF binding region
ENSG00000125968	Chromatin interaction
ENSG00000116984	Chromatin interaction

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10240996	0.89[EUR][1000 genomes]
rs10278052	0.89[EUR][1000 genomes]
rs1060382	0.89[EUR][1000 genomes]
rs10807685	0.89[EUR][1000 genomes]
rs11972247	0.89[EUR][1000 genomes]
rs11978819	0.89[EUR][1000 genomes]
rs13222878	0.89[EUR][1000 genomes]
rs13229671	0.89[EUR][1000 genomes]
rs13229816	0.89[EUR][1000 genomes]
rs13230970	0.89[EUR][1000 genomes]
rs1404453	0.89[EUR][1000 genomes]
rs1608713	0.89[EUR][1000 genomes]
rs1608716	0.89[EUR][1000 genomes]
rs1608717	0.83[EUR][1000 genomes]
rs1799102	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1852015	0.89[EUR][1000 genomes]
rs1970879	0.89[EUR][1000 genomes]
rs2177660	0.89[EUR][1000 genomes]
rs34216774	0.89[EUR][1000 genomes]
rs3807070	0.89[EUR][1000 genomes]
rs3813702	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3829812	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4607487	0.86[EUR][1000 genomes]
rs4618579	0.89[EUR][1000 genomes]
rs4717229	0.89[EUR][1000 genomes]
rs4718173	0.89[EUR][1000 genomes]
rs4718174	0.89[EUR][1000 genomes]
rs55872770	0.89[EUR][1000 genomes]
rs57212787	0.91[ASN][1000 genomes]
rs62454951	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454954	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454955	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454962	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454964	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454967	0.82[EUR][1000 genomes]
rs62454968	0.86[EUR][1000 genomes]
rs62454969	0.86[EUR][1000 genomes]
rs62454972	0.83[EUR][1000 genomes]
rs62454973	0.82[EUR][1000 genomes]
rs62454974	0.86[EUR][1000 genomes]
rs62455577	0.89[AMR][1000 genomes]
rs62455588	0.89[EUR][1000 genomes]
rs62455631	0.89[EUR][1000 genomes]
rs62455632	0.89[EUR][1000 genomes]
rs62455636	0.89[EUR][1000 genomes]
rs62455639	0.89[EUR][1000 genomes]
rs62455642	0.89[EUR][1000 genomes]
rs62455644	0.89[EUR][1000 genomes]
rs62455988	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455990	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455994	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455996	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455997	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455998	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62455999	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456001	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456002	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456004	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456007	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456009	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62456014	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62456015	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62456016	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62456017	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62456018	0.84[ASN][1000 genomes]
rs62456466	0.89[EUR][1000 genomes]
rs62456467	0.89[EUR][1000 genomes]
rs62456468	0.89[EUR][1000 genomes]
rs62456469	0.89[EUR][1000 genomes]
rs62456470	0.89[EUR][1000 genomes]
rs62456471	0.89[EUR][1000 genomes]
rs62456474	0.86[EUR][1000 genomes]
rs62456475	0.89[EUR][1000 genomes]
rs62456476	0.89[EUR][1000 genomes]
rs62456478	0.89[EUR][1000 genomes]
rs62456480	0.89[EUR][1000 genomes]
rs62456482	0.89[EUR][1000 genomes]
rs62456483	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62456484	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62456486	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62456503	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62456504	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62456505	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62456506	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62456508	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62456515	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62456517	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62456518	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62456519	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62456520	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62456521	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62456522	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62456526	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62456528	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62456532	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62457185	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457186	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457205	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457206	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457207	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457208	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62457209	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62457211	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6460215	0.89[EUR][1000 genomes]
rs6460218	0.89[EUR][1000 genomes]
rs6460219	0.89[EUR][1000 genomes]
rs6944240	0.89[EUR][1000 genomes]
rs7784273	0.89[EUR][1000 genomes]
rs7790578	0.89[EUR][1000 genomes]
rs7796144	0.89[EUR][1000 genomes]
rs7799463	0.89[EUR][1000 genomes]
rs7810102	0.89[EUR][1000 genomes]
rs7812013	0.89[EUR][1000 genomes]
rs9638412	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3506582	chr7:64323055-64563984	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	esv3506583	chr7:64323055-64563984	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	esv2752165	chr7:64345822-65208605	Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv888284	chr7:64406439-64562139	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv1033517	chr7:64443052-64942418	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
8	nsv538893	chr7:64443052-64942418	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv1034625	chr7:64456197-64850413	Genic enhancers Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
10	nsv1019089	chr7:64456197-64874187	Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
11	nsv1023699	chr7:64456197-64942418	Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
12	nsv517778	chr7:64462326-65326821	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
13	nsv429767	chr7:64473713-65415647	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
14	nsv917231	chr7:64478253-65300317	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
15	esv34341	chr7:64478386-65012082	Bivalent/Poised TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
16	esv2752166	chr7:64478386-65208605	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
17	nsv1029796	chr7:64494934-65302696	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
18	nsv916005	chr7:64499811-65012082	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv533081	chr7:64499945-65208605	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
20	esv3339156	chr7:64510176-65349050	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
21	nsv888285	chr7:64511564-64662075	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv888286	chr7:64529883-64800432	Enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	esv18831	chr7:64534085-64581674	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv966821	chr7:64534895-64541569	Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
25	nsv888287	chr7:64537992-64990806	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64541000-64541600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:64541000-64541800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:64541000-64541800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:64541000-64541800	Active TSS	Dnd41	blood
5	chr7:64541000-64541800	Active TSS	Osteobl	bone
6	chr7:64541000-64542000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:64541000-64542000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:64541000-64542000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:64541000-64542000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:64541000-64542000	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr7:64541000-64542000	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr7:64541000-64542000	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr7:64541000-64542000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:64541000-64542000	Active TSS	Primary B cells from cord blood	blood
15	chr7:64541000-64542000	Active TSS	Primary hematopoietic stem cells	blood
16	chr7:64541000-64542000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:64541000-64542000	Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr7:64541000-64542000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:64541000-64542000	Active TSS	Adipose Nuclei	Adipose
20	chr7:64541000-64542000	Active TSS	Fetal Intestine Large	intestine
21	chr7:64541000-64542000	Active TSS	Fetal Intestine Small	intestine
22	chr7:64541000-64542000	Active TSS	Fetal Lung	lung
23	chr7:64541000-64542000	Active TSS	Fetal Muscle Trunk	muscle
24	chr7:64541000-64542000	Active TSS	Fetal Thymus	thymus
25	chr7:64541000-64542000	Active TSS	Left Ventricle	heart
26	chr7:64541000-64542000	Active TSS	Lung	lung
27	chr7:64541000-64542000	Active TSS	Ovary	ovary
28	chr7:64541000-64542000	Active TSS	Placenta Amnion	Placenta Amnion
29	chr7:64541000-64542000	Active TSS	Psoas Muscle	Psoas
30	chr7:64541000-64542000	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr7:64541000-64542000	Active TSS	Stomach Smooth Muscle	stomach
32	chr7:64541000-64542000	Active TSS	Thymus	Thymus
33	chr7:64541000-64542000	Active TSS	HUVEC	blood vessel
34	chr7:64541000-64542000	Active TSS	NHDF-Ad	bronchial
35	chr7:64541000-64542000	Active TSS	NHLF	lung
36	chr7:64541000-64542200	Active TSS	ES-I3 Cell Line	embryonic stem cell
37	chr7:64541000-64542200	Active TSS	H1 Cell Line	embryonic stem cell
38	chr7:64541000-64542200	Active TSS	H9 Cell Line	embryonic stem cell
39	chr7:64541000-64542200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:64541000-64542200	Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr7:64541000-64542200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:64541000-64542200	Active TSS	iPS-15b Cell Line	embryonic stem cell
43	chr7:64541000-64542200	Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr7:64541000-64542200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr7:64541000-64542200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:64541000-64542200	Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr7:64541000-64542200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:64541000-64542200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:64541000-64542200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr7:64541000-64542200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links