Variant report

Variant	rs62458286
Chromosome Location	chr7:67286810-67286811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1032001	0.91[ASN][1000 genomes]
rs11773806	0.83[EUR][1000 genomes]
rs11974551	0.84[EUR][1000 genomes]
rs1564596	0.84[EUR][1000 genomes]
rs3846974	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442005	0.84[EUR][1000 genomes]
rs62458280	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6947952	0.82[EUR][1000 genomes]
rs6948405	0.92[ASN][1000 genomes]
rs6952040	0.84[EUR][1000 genomes]
rs6956623	0.84[EUR][1000 genomes]
rs6957295	0.84[EUR][1000 genomes]
rs6970746	0.84[EUR][1000 genomes]
rs6970918	0.84[EUR][1000 genomes]
rs6970938	0.84[EUR][1000 genomes]
rs7792189	0.84[EUR][1000 genomes]
rs7795165	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027532	chr7:67261526-67387398	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67285800-67287000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr7:67285800-67287200	Enhancers	NHEK	skin
3	chr7:67285800-67289000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:67286000-67287200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:67286000-67287600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:67286000-67289000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:67286400-67287600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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