Variant report

Variant	rs6948405
Chromosome Location	chr7:67309011-67309012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1032001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10950091	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11773314	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13224033	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13232787	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13241601	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13243242	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34714323	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35734943	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs3846974	0.92[ASN][1000 genomes]
rs62458286	0.92[ASN][1000 genomes]
rs7776685	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027532	chr7:67261526-67387398	Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67307800-67309200	Enhancers	Fetal Brain Male	brain
2	chr7:67309000-67312200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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