Variant report

Variant	rs62458777
Chromosome Location	chr7:69345767-69345768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs62457234	1.00[AFR][1000 genomes]
rs62457244	1.00[AFR][1000 genomes]
rs62458774	1.00[AFR][1000 genomes]
rs62458776	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs62458779	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62458780	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62458792	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62458798	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1017390	chr7:69339404-69406232	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538920	chr7:69339404-69406232	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69311400-69371600	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69337600-69354600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:69338400-69350600	Weak transcription	Brain Anterior Caudate	brain
4	chr7:69338400-69367200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:69343600-69350400	Weak transcription	Brain Substantia Nigra	brain
6	chr7:69343600-69354200	Weak transcription	Brain Angular Gyrus	brain
7	chr7:69344000-69354800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:69344600-69346400	Enhancers	Fetal Thymus	thymus
9	chr7:69344800-69347600	Enhancers	Primary B cells from peripheral blood	blood
10	chr7:69345000-69346400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:69345000-69346800	Enhancers	Thymus	Thymus
12	chr7:69345200-69346000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:69345200-69346000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:69345200-69346000	Enhancers	Brain Germinal Matrix	brain
15	chr7:69345200-69346200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:69345200-69346600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:69345400-69345800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:69345400-69346200	Flanking Active TSS	GM12878-XiMat	blood
19	chr7:69345400-69346600	Weak transcription	Fetal Brain Male	brain
20	chr7:69345400-69347400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr7:69345400-69350600	Weak transcription	Fetal Stomach	stomach
22	chr7:69345600-69346200	Enhancers	Colon Smooth Muscle	Colon
23	chr7:69345600-69346400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:69345600-69346600	Enhancers	Fetal Brain Female	brain
25	chr7:69345600-69348000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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