Variant report

Variant	rs62458779
Chromosome Location	chr7:69358904-69358905
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:68868001..68868754-chr7:69358735..69359601,3	MCF-7	breast:
2	chr7:69334524..69336993-chr7:69356452..69358911,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs62457234	1.00[AFR][1000 genomes]
rs62457244	1.00[AFR][1000 genomes]
rs62458774	1.00[AFR][1000 genomes]
rs62458776	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs62458777	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62458780	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62458792	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62458798	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1017390	chr7:69339404-69406232	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538920	chr7:69339404-69406232	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69311400-69371600	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69338400-69367200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr7:69351200-69375400	Weak transcription	Fetal Stomach	stomach
4	chr7:69355200-69361200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:69355200-69366800	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:69355400-69360600	Weak transcription	Dnd41	blood
7	chr7:69355400-69368000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:69355400-69370600	Weak transcription	Fetal Brain Female	brain
9	chr7:69355400-69371200	Weak transcription	Brain Anterior Caudate	brain
10	chr7:69355400-69372000	Weak transcription	Adipose Nuclei	Adipose
11	chr7:69355400-69376600	Weak transcription	Ovary	ovary
12	chr7:69356200-69361000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:69357800-69360000	Enhancers	Fetal Brain Male	brain
14	chr7:69358000-69359000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:69358000-69359000	Enhancers	Brain Hippocampus Middle	brain
16	chr7:69358000-69359200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:69358000-69361600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:69358200-69359200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:69358200-69359400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:69358200-69359600	Enhancers	Fetal Thymus	thymus
21	chr7:69358400-69359000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:69358400-69359000	Enhancers	Brain Germinal Matrix	brain
23	chr7:69358400-69359000	Enhancers	Brain Substantia Nigra	brain
24	chr7:69358400-69359200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr7:69358400-69359200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr7:69358600-69359000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:69358600-69359000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:69358600-69359000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:69358600-69359000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr7:69358600-69359000	Enhancers	GM12878-XiMat	blood
31	chr7:69358600-69359200	Enhancers	H1 Cell Line	embryonic stem cell
32	chr7:69358600-69359200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr7:69358600-69359200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr7:69358600-69359200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr7:69358600-69359200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr7:69358600-69360200	Enhancers	Thymus	Thymus
37	chr7:69358800-69359000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr7:69358800-69359200	Enhancers	H9 Cell Line	embryonic stem cell
39	chr7:69358800-69361200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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