Variant report

Variant	rs62458989
Chromosome Location	chr7:79029172-79029173
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10085854	0.80[ASN][1000 genomes]
rs10214949	0.88[EUR][1000 genomes]
rs10224707	0.88[EUR][1000 genomes]
rs10225318	0.80[ASN][1000 genomes]
rs10238084	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10239869	0.88[EUR][1000 genomes]
rs10247922	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248439	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248584	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10248625	0.88[EUR][1000 genomes]
rs10256084	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10258290	0.80[ASN][1000 genomes]
rs10260696	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10261439	1.00[ASN][1000 genomes]
rs10262779	0.88[EUR][1000 genomes]
rs10263112	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10269542	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275975	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276665	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155234	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13239510	0.88[EUR][1000 genomes]
rs1528262	0.80[ASN][1000 genomes]
rs16886549	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17421940	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17478565	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17481134	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17818755	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1918930	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997277	0.80[ASN][1000 genomes]
rs2190181	0.88[EUR][1000 genomes]
rs2190182	0.88[EUR][1000 genomes]
rs2214808	0.85[EUR][1000 genomes]
rs2364908	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364920	0.85[EUR][1000 genomes]
rs28450541	0.80[ASN][1000 genomes]
rs28611031	0.80[ASN][1000 genomes]
rs28681068	0.88[EUR][1000 genomes]
rs28700941	0.80[ASN][1000 genomes]
rs2886214	0.85[EUR][1000 genomes]
rs4236606	0.88[EUR][1000 genomes]
rs4236607	0.88[EUR][1000 genomes]
rs4291207	0.86[EUR][1000 genomes]
rs4559162	0.85[EUR][1000 genomes]
rs4621743	0.86[EUR][1000 genomes]
rs4730814	0.85[EUR][1000 genomes]
rs4730815	0.85[EUR][1000 genomes]
rs4730816	0.85[EUR][1000 genomes]
rs4730818	0.88[EUR][1000 genomes]
rs4730820	0.88[EUR][1000 genomes]
rs56829360	0.80[ASN][1000 genomes]
rs61075638	0.80[ASN][1000 genomes]
rs62458985	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458986	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458987	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458988	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62458990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466602	0.80[ASN][1000 genomes]
rs6466622	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466638	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466640	0.85[EUR][1000 genomes]
rs6953480	0.85[EUR][1000 genomes]
rs6953613	0.85[EUR][1000 genomes]
rs6970833	0.85[EUR][1000 genomes]
rs6971965	0.85[EUR][1000 genomes]
rs6977556	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73375167	0.80[ASN][1000 genomes]
rs7787956	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791179	0.85[EUR][1000 genomes]
rs7791667	0.85[EUR][1000 genomes]
rs7800314	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803949	0.85[EUR][1000 genomes]
rs7806922	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7810770	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7811441	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848916	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848932	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848934	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848944	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848948	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs848953	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991261	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv464600	chr7:78981719-79030922	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv607663	chr7:78981719-79030922	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv888514	chr7:78987060-79061837	Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv888515	chr7:78987060-79221707	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv607664	chr7:78998409-79057761	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv607665	chr7:79027730-79063644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79017600-79030400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:79027800-79030400	Weak transcription	Adipose Nuclei	Adipose
3	chr7:79027800-79032200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:79027800-79032200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:79027800-79033200	Weak transcription	NHDF-Ad	bronchial
6	chr7:79028000-79029800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:79028000-79029800	Weak transcription	Brain Angular Gyrus	brain
8	chr7:79028000-79030400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:79028000-79030600	Weak transcription	Brain Anterior Caudate	brain
10	chr7:79028000-79032200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:79028000-79032600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:79028000-79033200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:79028000-79033200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:79028000-79034600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr7:79028200-79032200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:79028200-79032200	Weak transcription	Osteobl	bone
17	chr7:79028400-79030400	Weak transcription	Brain Hippocampus Middle	brain
18	chr7:79028800-79032200	Weak transcription	NHLF	lung

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