Variant report
Variant | rs62458990 |
---|---|
Chromosome Location | chr7:79037844-79037845 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:79036736..79038245-chr7:79041747..79043274,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10085854 | 0.80[ASN][1000 genomes] |
rs10214949 | 0.88[EUR][1000 genomes] |
rs10224707 | 0.88[EUR][1000 genomes] |
rs10225318 | 0.80[ASN][1000 genomes] |
rs10238084 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10239869 | 0.88[EUR][1000 genomes] |
rs10247922 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10248439 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10248584 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10248625 | 0.88[EUR][1000 genomes] |
rs10256084 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10258290 | 0.80[ASN][1000 genomes] |
rs10260696 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10261439 | 1.00[ASN][1000 genomes] |
rs10262779 | 0.88[EUR][1000 genomes] |
rs10263112 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10269542 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10275975 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10276665 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1155234 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs13239510 | 0.88[EUR][1000 genomes] |
rs1528262 | 0.80[ASN][1000 genomes] |
rs16886549 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17421940 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17478565 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17481134 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17818755 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1918930 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1997277 | 0.80[ASN][1000 genomes] |
rs2190181 | 0.88[EUR][1000 genomes] |
rs2190182 | 0.88[EUR][1000 genomes] |
rs2214808 | 0.85[EUR][1000 genomes] |
rs2364908 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2364920 | 0.85[EUR][1000 genomes] |
rs28450541 | 0.80[ASN][1000 genomes] |
rs28611031 | 0.80[ASN][1000 genomes] |
rs28681068 | 0.88[EUR][1000 genomes] |
rs28700941 | 0.80[ASN][1000 genomes] |
rs2886214 | 0.85[EUR][1000 genomes] |
rs4236606 | 0.88[EUR][1000 genomes] |
rs4236607 | 0.88[EUR][1000 genomes] |
rs4291207 | 0.86[EUR][1000 genomes] |
rs4559162 | 0.85[EUR][1000 genomes] |
rs4621743 | 0.86[EUR][1000 genomes] |
rs4730814 | 0.85[EUR][1000 genomes] |
rs4730815 | 0.85[EUR][1000 genomes] |
rs4730816 | 0.85[EUR][1000 genomes] |
rs4730818 | 0.88[EUR][1000 genomes] |
rs4730820 | 0.88[EUR][1000 genomes] |
rs56829360 | 0.80[ASN][1000 genomes] |
rs61075638 | 0.80[ASN][1000 genomes] |
rs62458985 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62458986 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62458987 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62458988 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62458989 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6466602 | 0.80[ASN][1000 genomes] |
rs6466622 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6466638 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6466640 | 0.85[EUR][1000 genomes] |
rs6953480 | 0.85[EUR][1000 genomes] |
rs6953613 | 0.85[EUR][1000 genomes] |
rs6970833 | 0.85[EUR][1000 genomes] |
rs6971965 | 0.85[EUR][1000 genomes] |
rs6977556 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73375167 | 0.80[ASN][1000 genomes] |
rs7787956 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7791179 | 0.85[EUR][1000 genomes] |
rs7791667 | 0.85[EUR][1000 genomes] |
rs7800314 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7803949 | 0.85[EUR][1000 genomes] |
rs7806922 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7810770 | 0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs7811441 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs848916 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs848932 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs848934 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs848944 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs848948 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs848953 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs991261 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
3 | nsv1029799 | chr7:78608097-79061737 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | esv2764028 | chr7:78874740-79112630 | Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
5 | nsv888514 | chr7:78987060-79061837 | Weak transcription Active TSS Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv888515 | chr7:78987060-79221707 | Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
7 | nsv607664 | chr7:78998409-79057761 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | nsv607665 | chr7:79027730-79063644 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
9 | nsv607666 | chr7:79029872-79063644 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
10 | nsv607667 | chr7:79029872-79065268 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
11 | nsv607668 | chr7:79029872-79070452 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:79031000-79040800 | Weak transcription | Brain Anterior Caudate | brain |
2 | chr7:79033600-79039600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
3 | chr7:79034800-79038200 | Enhancers | Brain Substantia Nigra | brain |
4 | chr7:79036800-79044200 | Weak transcription | Adipose Nuclei | Adipose |
5 | chr7:79037000-79039600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
6 | chr7:79037000-79040200 | Weak transcription | Brain Hippocampus Middle | brain |
7 | chr7:79037200-79048800 | Weak transcription | NHLF | lung |
8 | chr7:79037400-79038800 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
9 | chr7:79037400-79040800 | Weak transcription | Brain Inferior Temporal Lobe | brain |
10 | chr7:79037400-79041600 | Weak transcription | Brain Angular Gyrus | brain |
11 | chr7:79037400-79041600 | Weak transcription | Brain Cingulate Gyrus | brain |