Variant report

Variant	rs624597
Chromosome Location	chr10:89803608-89803609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89621356..89623996-chr10:89801457..89803659,3	MCF-7	breast:
2	chr10:89800688..89804155-chr10:89807111..89810895,5	MCF-7	breast:
3	chr10:89800523..89803853-chr10:89848283..89850995,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227905	Chromatin interaction
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2471891	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs479727	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs534182	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs559783	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs563675	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs588307	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs677422	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs683763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs760177	0.81[CHB][hapmap]
rs812629	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89798400-89804800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr10:89798400-89805400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr10:89801200-89804400	Enhancers	Placenta	Placenta
4	chr10:89801400-89804200	Enhancers	Fetal Thymus	thymus
5	chr10:89801600-89806000	Enhancers	Dnd41	blood
6	chr10:89801600-89808400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr10:89802200-89806600	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:89802400-89805000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr10:89802400-89806200	Weak transcription	Right Atrium	heart
10	chr10:89802600-89805000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr10:89802600-89822200	Weak transcription	Aorta	Aorta
12	chr10:89802800-89804400	Weak transcription	NH-A	brain
13	chr10:89802800-89805000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:89802800-89805000	Weak transcription	Fetal Heart	heart
15	chr10:89803000-89804800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:89803000-89805000	Weak transcription	Pancreas	Pancrea
17	chr10:89803000-89805200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr10:89803200-89804200	Weak transcription	Fetal Intestine Large	intestine
19	chr10:89803200-89804800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr10:89803200-89804800	Weak transcription	NHDF-Ad	bronchial
21	chr10:89803200-89805000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr10:89803200-89806000	Weak transcription	Spleen	Spleen
23	chr10:89803400-89804800	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:89803400-89805000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr10:89803400-89805000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:89803400-89805000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr10:89803400-89805000	Weak transcription	Brain Substantia Nigra	brain
28	chr10:89803400-89805200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:89803400-89805800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:89803400-89822000	Weak transcription	Psoas Muscle	Psoas
31	chr10:89803600-89804800	Weak transcription	Adipose Nuclei	Adipose
32	chr10:89803600-89804800	Weak transcription	Fetal Intestine Small	intestine
33	chr10:89803600-89804800	Weak transcription	Thymus	Thymus
34	chr10:89803600-89805000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:89803600-89805000	Weak transcription	Fetal Lung	lung
36	chr10:89803600-89805000	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:89803600-89805200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:89803600-89806200	Weak transcription	Lung	lung
39	chr10:89803600-89806600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:89803600-89807800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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