The 2.0 version of rSNPBase

Variant report

Variant rs62462669
Chromosome Location chr7:79814839-79814840
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:70 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:79795400-79816000 Weak transcription Rectal Smooth Muscle rectum
2 chr7:79796400-79816000 Weak transcription Stomach Smooth Muscle stomach
3 chr7:79801800-79840400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr7:79802600-79820200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr7:79806000-79816000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr7:79807200-79829200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
7 chr7:79807200-79833400 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr7:79807600-79816200 Weak transcription Osteobl bone
9 chr7:79807800-79816000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr7:79807800-79842000 Weak transcription Muscle Satellite Cultured Cells --
11 chr7:79809400-79815600 Weak transcription Liver Liver
12 chr7:79809600-79847600 Weak transcription HUVEC blood vessel
13 chr7:79809800-79815400 Enhancers ES-I3 Cell Line embryonic stem cell
14 chr7:79810000-79815800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr7:79810200-79816000 Weak transcription Fetal Brain Female brain
16 chr7:79810400-79818400 Weak transcription Primary hematopoietic stem cells short term culture blood
17 chr7:79810600-79815400 Weak transcription Right Atrium heart
18 chr7:79810800-79815400 Enhancers iPS-15b Cell Line embryonic stem cell
19 chr7:79811000-79816000 Weak transcription Gastric stomach
20 chr7:79811000-79817200 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr7:79811600-79845000 Weak transcription Primary T cells from cord blood blood
22 chr7:79812000-79815200 Enhancers H9 Cell Line embryonic stem cell
23 chr7:79812000-79815200 Enhancers Fetal Adrenal Gland Adrenal Gland
24 chr7:79812000-79816000 Enhancers Fetal Lung lung
25 chr7:79812400-79815000 Enhancers HUES48 Cell Line embryonic stem cell
26 chr7:79812400-79815000 Enhancers iPS-18 Cell Line embryonic stem cell
27 chr7:79812400-79815400 Enhancers HUES64 Cell Line embryonic stem cell
28 chr7:79812400-79815600 Weak transcription A549 lung
29 chr7:79812400-79816000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
30 chr7:79812400-79816000 Weak transcription NHDF-Ad bronchial
31 chr7:79812400-79816000 Weak transcription NHLF lung
32 chr7:79812400-79818200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr7:79812400-79827800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr7:79812400-79827800 Weak transcription NHEK skin
35 chr7:79812400-79828200 Weak transcription HMEC breast
36 chr7:79812600-79815400 Enhancers H1 Cell Line embryonic stem cell
37 chr7:79812800-79815400 Enhancers iPS-20b Cell Line embryonic stem cell
38 chr7:79812800-79817200 Enhancers Adipose Nuclei Adipose
39 chr7:79812800-79817600 Enhancers HUES6 Cell Line embryonic stem cell
40 chr7:79813000-79815200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
41 chr7:79813000-79815400 Enhancers Brain Hippocampus Middle brain
42 chr7:79813000-79816000 Enhancers Brain Angular Gyrus brain
43 chr7:79813200-79818800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
44 chr7:79813400-79816000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr7:79813400-79816000 Weak transcription Colon Smooth Muscle Colon
46 chr7:79813400-79816000 Weak transcription Fetal Stomach stomach
47 chr7:79813400-79829000 Weak transcription Fetal Muscle Leg muscle
48 chr7:79813800-79816800 Enhancers Brain Anterior Caudate brain
49 chr7:79813800-79828000 Weak transcription Primary hematopoietic stem cells blood
50 chr7:79814200-79815400 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015