Variant report

Variant	rs72612616
Chromosome Location	chr7:79880411-79880412
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10241540	0.82[ASN][1000 genomes]
rs1511685	1.00[AMR][1000 genomes]
rs17147931	0.83[ASN][1000 genomes]
rs17153598	0.94[ASN][1000 genomes]
rs1912807	1.00[AMR][1000 genomes]
rs62462669	1.00[AMR][1000 genomes]
rs6467090	1.00[AMR][1000 genomes]
rs6973017	1.00[ASN][1000 genomes]
rs72612609	0.94[ASN][1000 genomes]
rs72612610	1.00[ASN][1000 genomes]
rs72612611	1.00[ASN][1000 genomes]
rs72612612	1.00[ASN][1000 genomes]
rs72612613	1.00[ASN][1000 genomes]
rs72612614	1.00[ASN][1000 genomes]
rs72612615	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72612618	0.82[ASN][1000 genomes]
rs7783639	0.94[ASN][1000 genomes]
rs7789551	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7800052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv517963	chr7:79874467-79887271	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79879400-79882600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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