Variant report

Variant	rs7783639
Chromosome Location	chr7:79849441-79849442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10232647	1.00[EUR][1000 genomes]
rs10237103	1.00[EUR][1000 genomes]
rs10244782	0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10252170	1.00[EUR][1000 genomes]
rs10259591	1.00[EUR][1000 genomes]
rs10265195	1.00[EUR][1000 genomes]
rs10265331	1.00[EUR][1000 genomes]
rs10279516	1.00[EUR][1000 genomes]
rs10429156	1.00[TSI][hapmap];0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs10435401	0.83[ASN][1000 genomes]
rs11981471	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs11983471	0.83[ASN][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17147931	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17153503	0.83[ASN][1000 genomes]
rs17153506	0.83[ASN][1000 genomes]
rs17153507	0.83[ASN][1000 genomes]
rs17153514	0.83[ASN][1000 genomes]
rs17153536	0.83[ASN][1000 genomes]
rs17153557	0.83[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs17153567	0.83[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17153598	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17153826	1.00[EUR][1000 genomes]
rs17153919	1.00[EUR][1000 genomes]
rs304786	1.00[EUR][1000 genomes]
rs56213139	1.00[EUR][1000 genomes]
rs56266009	1.00[EUR][1000 genomes]
rs57209885	0.83[AMR][1000 genomes]
rs58015101	1.00[EUR][1000 genomes]
rs58702842	1.00[EUR][1000 genomes]
rs59069170	1.00[EUR][1000 genomes]
rs59148543	1.00[EUR][1000 genomes]
rs6949382	1.00[EUR][1000 genomes]
rs6956322	1.00[EUR][1000 genomes]
rs6966043	1.00[EUR][1000 genomes]
rs6973017	0.94[ASN][1000 genomes]
rs72612609	1.00[ASN][1000 genomes]
rs72612610	0.94[ASN][1000 genomes]
rs72612611	0.94[ASN][1000 genomes]
rs72612612	0.94[ASN][1000 genomes]
rs72612613	0.94[ASN][1000 genomes]
rs72612614	0.94[ASN][1000 genomes]
rs72612615	0.94[ASN][1000 genomes]
rs72612616	0.94[ASN][1000 genomes]
rs73374551	1.00[EUR][1000 genomes]
rs73374586	1.00[EUR][1000 genomes]
rs73374587	1.00[EUR][1000 genomes]
rs73376504	1.00[EUR][1000 genomes]
rs73376514	1.00[EUR][1000 genomes]
rs73376517	1.00[EUR][1000 genomes]
rs73376520	1.00[EUR][1000 genomes]
rs73376532	1.00[EUR][1000 genomes]
rs73376537	1.00[EUR][1000 genomes]
rs73376566	1.00[EUR][1000 genomes]
rs73378618	1.00[EUR][1000 genomes]
rs73708332	1.00[EUR][1000 genomes]
rs7776592	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7789551	0.94[ASN][1000 genomes]
rs7792549	1.00[EUR][1000 genomes]
rs7793962	0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7797671	1.00[EUR][1000 genomes]
rs7798923	0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801052	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79815000-79850200	Weak transcription	Lung	lung
2	chr7:79815200-79859600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:79816400-79854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:79817000-79851200	Weak transcription	Aorta	Aorta
5	chr7:79820600-79853800	Weak transcription	Left Ventricle	heart
6	chr7:79825400-79856600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:79829200-79853000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:79831000-79853800	Weak transcription	Gastric	stomach
9	chr7:79831600-79850800	Weak transcription	Fetal Stomach	stomach
10	chr7:79831800-79861200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:79832400-79855000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:79834000-79850600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:79836000-79859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:79836600-79861000	Weak transcription	HSMMtube	muscle
15	chr7:79838800-79850400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:79839600-79850200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:79840000-79853800	Weak transcription	Brain Anterior Caudate	brain
18	chr7:79840200-79850400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:79840400-79851600	Weak transcription	Small Intestine	intestine
20	chr7:79840800-79850400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:79841200-79853800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:79841200-79854000	Weak transcription	Fetal Intestine Small	intestine
23	chr7:79842800-79853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr7:79843000-79852600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:79843000-79862800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr7:79843400-79850800	Weak transcription	Fetal Intestine Large	intestine
27	chr7:79843400-79853200	Weak transcription	Brain Substantia Nigra	brain
28	chr7:79843400-79853800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:79843800-79853200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr7:79843800-79853600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:79844200-79849600	Enhancers	Fetal Brain Male	brain
32	chr7:79844400-79853200	Weak transcription	Brain Germinal Matrix	brain
33	chr7:79844400-79853600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr7:79845800-79850800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:79845800-79851400	Weak transcription	Fetal Muscle Leg	muscle
36	chr7:79845800-79853600	Weak transcription	Fetal Muscle Trunk	muscle
37	chr7:79845800-79853800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:79846200-79850600	Weak transcription	Liver	Liver
39	chr7:79846400-79850000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:79846800-79850800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:79846800-79861000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr7:79847000-79853600	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr7:79847000-79853800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr7:79847200-79853800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr7:79847200-79853800	Weak transcription	Brain Hippocampus Middle	brain
46	chr7:79847200-79854800	Weak transcription	Fetal Kidney	kidney
47	chr7:79847400-79854400	Weak transcription	NHDF-Ad	bronchial
48	chr7:79847600-79852000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:79847800-79849600	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:79847800-79849800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links