Variant report

Variant	rs73376532
Chromosome Location	chr7:79700070-79700071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10232647	1.00[EUR][1000 genomes]
rs10237103	1.00[EUR][1000 genomes]
rs10244782	1.00[EUR][1000 genomes]
rs10252170	1.00[EUR][1000 genomes]
rs10259591	1.00[EUR][1000 genomes]
rs10265195	1.00[EUR][1000 genomes]
rs10265331	1.00[EUR][1000 genomes]
rs10279516	1.00[EUR][1000 genomes]
rs10279726	1.00[EUR][1000 genomes]
rs10429156	1.00[EUR][1000 genomes]
rs11981471	1.00[EUR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[EUR][1000 genomes]
rs17153557	1.00[EUR][1000 genomes]
rs17153567	1.00[EUR][1000 genomes]
rs56213139	1.00[EUR][1000 genomes]
rs56266009	1.00[EUR][1000 genomes]
rs58015101	1.00[EUR][1000 genomes]
rs58702842	1.00[EUR][1000 genomes]
rs59069170	1.00[EUR][1000 genomes]
rs59148543	1.00[EUR][1000 genomes]
rs6949382	1.00[EUR][1000 genomes]
rs6956322	1.00[EUR][1000 genomes]
rs6966043	1.00[EUR][1000 genomes]
rs73374551	1.00[EUR][1000 genomes]
rs73374586	1.00[EUR][1000 genomes]
rs73374587	1.00[EUR][1000 genomes]
rs73376504	1.00[EUR][1000 genomes]
rs73376514	1.00[EUR][1000 genomes]
rs73376517	1.00[EUR][1000 genomes]
rs73376520	1.00[EUR][1000 genomes]
rs73376537	1.00[EUR][1000 genomes]
rs73376558	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376561	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376566	1.00[EUR][1000 genomes]
rs73378618	1.00[EUR][1000 genomes]
rs73708332	1.00[EUR][1000 genomes]
rs7776592	1.00[EUR][1000 genomes]
rs7783639	1.00[EUR][1000 genomes]
rs7793962	1.00[EUR][1000 genomes]
rs7798923	1.00[EUR][1000 genomes]
rs7800898	1.00[AMR][1000 genomes]
rs7801052	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79695800-79707400	Weak transcription	Psoas Muscle	Psoas
2	chr7:79696800-79707400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:79699200-79700800	Enhancers	Adipose Nuclei	Adipose
4	chr7:79699600-79700800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:79699600-79701400	Enhancers	Fetal Lung	lung
6	chr7:79699800-79701000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:79699800-79704400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:79700000-79701200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:79700000-79704400	Weak transcription	Osteobl	bone

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