Variant report

Variant	rs6949382
Chromosome Location	chr7:79713431-79713432
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10232647	1.00[EUR][1000 genomes]
rs10237103	1.00[EUR][1000 genomes]
rs10244782	1.00[EUR][1000 genomes]
rs10252170	1.00[EUR][1000 genomes]
rs10259591	1.00[EUR][1000 genomes]
rs10265195	1.00[EUR][1000 genomes]
rs10265331	1.00[EUR][1000 genomes]
rs10279516	1.00[EUR][1000 genomes]
rs10429156	1.00[EUR][1000 genomes]
rs11981471	1.00[EUR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[EUR][1000 genomes]
rs17153557	1.00[EUR][1000 genomes]
rs17153567	1.00[EUR][1000 genomes]
rs56213139	1.00[EUR][1000 genomes]
rs56266009	1.00[EUR][1000 genomes]
rs58015101	1.00[EUR][1000 genomes]
rs58702842	1.00[EUR][1000 genomes]
rs59069170	1.00[EUR][1000 genomes]
rs59148543	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6946197	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6956322	1.00[EUR][1000 genomes]
rs6966043	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73374551	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73374586	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73374587	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73376504	1.00[EUR][1000 genomes]
rs73376514	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73376517	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73376520	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73376532	1.00[EUR][1000 genomes]
rs73376537	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73376566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73376576	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376578	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376581	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73378618	1.00[EUR][1000 genomes]
rs73708332	1.00[EUR][1000 genomes]
rs7776592	1.00[EUR][1000 genomes]
rs7783639	1.00[EUR][1000 genomes]
rs7793962	1.00[EUR][1000 genomes]
rs7798923	1.00[EUR][1000 genomes]
rs7801052	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79707600-79716600	Weak transcription	Brain Substantia Nigra	brain
2	chr7:79708000-79716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:79708400-79716400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:79708400-79716800	Weak transcription	NHEK	skin
5	chr7:79712200-79716400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:79712800-79713800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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