Variant report

Variant	rs7793962
Chromosome Location	chr7:79845272-79845273
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10232647	1.00[EUR][1000 genomes]
rs10237103	1.00[EUR][1000 genomes]
rs10244782	0.83[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10252170	1.00[EUR][1000 genomes]
rs10259591	1.00[EUR][1000 genomes]
rs10265195	1.00[EUR][1000 genomes]
rs10265331	1.00[EUR][1000 genomes]
rs10279516	1.00[EUR][1000 genomes]
rs10429156	1.00[EUR][1000 genomes]
rs11981471	1.00[EUR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153557	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs17153567	0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17153826	1.00[EUR][1000 genomes]
rs304786	1.00[EUR][1000 genomes]
rs56213139	1.00[EUR][1000 genomes]
rs56266009	1.00[EUR][1000 genomes]
rs58015101	1.00[EUR][1000 genomes]
rs58702842	1.00[EUR][1000 genomes]
rs59069170	1.00[EUR][1000 genomes]
rs59148543	1.00[EUR][1000 genomes]
rs6949382	1.00[EUR][1000 genomes]
rs6956322	1.00[EUR][1000 genomes]
rs6966043	1.00[EUR][1000 genomes]
rs73374551	1.00[EUR][1000 genomes]
rs73374586	1.00[EUR][1000 genomes]
rs73374587	1.00[EUR][1000 genomes]
rs73376504	1.00[EUR][1000 genomes]
rs73376514	1.00[EUR][1000 genomes]
rs73376517	1.00[EUR][1000 genomes]
rs73376520	1.00[EUR][1000 genomes]
rs73376532	1.00[EUR][1000 genomes]
rs73376537	1.00[EUR][1000 genomes]
rs73376566	1.00[EUR][1000 genomes]
rs73378618	1.00[EUR][1000 genomes]
rs73708332	1.00[EUR][1000 genomes]
rs7776592	0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7783639	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7797671	1.00[EUR][1000 genomes]
rs7798923	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7801052	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79809600-79847600	Weak transcription	HUVEC	blood vessel
2	chr7:79815000-79848200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:79815000-79850200	Weak transcription	Lung	lung
4	chr7:79815200-79859600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:79816200-79846800	Weak transcription	Esophagus	oesophagus
6	chr7:79816400-79854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:79817000-79851200	Weak transcription	Aorta	Aorta
8	chr7:79820600-79847000	Weak transcription	NHLF	lung
9	chr7:79820600-79853800	Weak transcription	Left Ventricle	heart
10	chr7:79825000-79847400	Weak transcription	Pancreas	Pancrea
11	chr7:79825400-79856600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:79828000-79845600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:79829200-79846000	Weak transcription	Right Ventricle	heart
14	chr7:79829200-79853000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:79829400-79845800	Weak transcription	Psoas Muscle	Psoas
16	chr7:79830800-79848400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr7:79831000-79848200	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:79831000-79853800	Weak transcription	Gastric	stomach
19	chr7:79831600-79850800	Weak transcription	Fetal Stomach	stomach
20	chr7:79831800-79861200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr7:79832400-79855000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:79834000-79850600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:79836000-79859600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:79836600-79861000	Weak transcription	HSMMtube	muscle
25	chr7:79837800-79847600	Strong transcription	Primary hematopoietic stem cells	blood
26	chr7:79838000-79849400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr7:79838800-79850400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr7:79839200-79846800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr7:79839600-79850200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:79839800-79845800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:79839800-79847000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr7:79840000-79853800	Weak transcription	Brain Anterior Caudate	brain
33	chr7:79840200-79846000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr7:79840200-79846800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr7:79840200-79847000	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr7:79840200-79847000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:79840200-79847000	Strong transcription	Adipose Nuclei	Adipose
38	chr7:79840200-79847200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:79840200-79847200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:79840200-79849400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:79840200-79850400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:79840400-79845600	Strong transcription	Fetal Lung	lung
43	chr7:79840400-79845800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr7:79840400-79845800	Strong transcription	Ovary	ovary
45	chr7:79840400-79846800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:79840400-79846800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr7:79840400-79847000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr7:79840400-79851600	Weak transcription	Small Intestine	intestine
49	chr7:79840600-79846600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr7:79840800-79848000	Weak transcription	Hela-S3	cervix

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