Variant report

Variant	rs304786
Chromosome Location	chr7:80020597-80020598
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10244782	1.00[EUR][1000 genomes]
rs10429156	1.00[EUR][1000 genomes]
rs11981471	1.00[EUR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[EUR][1000 genomes]
rs17153557	1.00[EUR][1000 genomes]
rs17153567	1.00[EUR][1000 genomes]
rs17153826	1.00[EUR][1000 genomes]
rs17153919	1.00[EUR][1000 genomes]
rs7776592	1.00[EUR][1000 genomes]
rs7783639	1.00[EUR][1000 genomes]
rs7792549	1.00[EUR][1000 genomes]
rs7793962	1.00[EUR][1000 genomes]
rs7797671	1.00[EUR][1000 genomes]
rs7798923	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80015800-80022000	Weak transcription	HepG2	liver
2	chr7:80017200-80029400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:80017400-80021400	Weak transcription	Liver	Liver
4	chr7:80017600-80023400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:80019400-80021000	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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