Variant report

Variant	rs7797671
Chromosome Location	chr7:80040554-80040555
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10227661	0.81[AFR][1000 genomes]
rs10244782	1.00[EUR][1000 genomes]
rs10246082	0.81[AFR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[EUR][1000 genomes]
rs17153567	1.00[EUR][1000 genomes]
rs17153826	1.00[EUR][1000 genomes]
rs17153872	0.81[AFR][1000 genomes]
rs17153919	1.00[EUR][1000 genomes]
rs304786	1.00[EUR][1000 genomes]
rs471775	0.83[AFR][1000 genomes]
rs483336	0.82[AFR][1000 genomes]
rs492403	0.83[AFR][1000 genomes]
rs496894	0.82[AFR][1000 genomes]
rs504899	0.83[AFR][1000 genomes]
rs512689	0.83[AFR][1000 genomes]
rs513740	0.82[AFR][1000 genomes]
rs533267	0.82[AFR][1000 genomes]
rs540192	0.83[AFR][1000 genomes]
rs568125	0.82[AFR][1000 genomes]
rs575195	0.83[AFR][1000 genomes]
rs581101	0.82[AFR][1000 genomes]
rs7776592	1.00[EUR][1000 genomes]
rs7783639	1.00[EUR][1000 genomes]
rs7792549	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7793962	1.00[EUR][1000 genomes]
rs7798923	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv464603	chr7:80030601-80064727	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607679	chr7:80030601-80064727	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1031915	chr7:80032898-80087603	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80033800-80041000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:80034200-80060200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:80039200-80043200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:80039400-80043000	Enhancers	NHDF-Ad	bronchial
5	chr7:80039800-80041000	Weak transcription	Osteobl	bone
6	chr7:80039800-80041200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:80040000-80041000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:80040200-80042200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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