Variant report

Variant	rs17153557
Chromosome Location	chr7:79825420-79825421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10232647	1.00[EUR][1000 genomes]
rs10237103	1.00[EUR][1000 genomes]
rs10244782	0.96[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10252170	1.00[EUR][1000 genomes]
rs10259591	1.00[EUR][1000 genomes]
rs10265195	1.00[EUR][1000 genomes]
rs10265331	1.00[EUR][1000 genomes]
rs10279516	1.00[EUR][1000 genomes]
rs10429156	0.85[ASW][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981471	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983471	1.00[AMR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs17153567	0.83[ASW][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17153826	1.00[EUR][1000 genomes]
rs304786	1.00[EUR][1000 genomes]
rs56213139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56266009	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58015101	1.00[EUR][1000 genomes]
rs58702842	1.00[EUR][1000 genomes]
rs59069170	1.00[EUR][1000 genomes]
rs59148543	1.00[EUR][1000 genomes]
rs6949382	1.00[EUR][1000 genomes]
rs6956322	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966043	1.00[EUR][1000 genomes]
rs73374551	1.00[EUR][1000 genomes]
rs73374586	1.00[EUR][1000 genomes]
rs73374587	1.00[EUR][1000 genomes]
rs73376504	1.00[EUR][1000 genomes]
rs73376514	1.00[EUR][1000 genomes]
rs73376517	1.00[EUR][1000 genomes]
rs73376520	1.00[EUR][1000 genomes]
rs73376532	1.00[EUR][1000 genomes]
rs73376537	1.00[EUR][1000 genomes]
rs73376566	1.00[EUR][1000 genomes]
rs73378618	1.00[EUR][1000 genomes]
rs73708332	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7776592	0.93[YRI][hapmap];1.00[EUR][1000 genomes]
rs7783639	1.00[EUR][1000 genomes]
rs7793962	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs7798923	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs7801052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79801800-79840400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:79807200-79829200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:79807200-79833400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr7:79807800-79842000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr7:79809600-79847600	Weak transcription	HUVEC	blood vessel
6	chr7:79811600-79845000	Weak transcription	Primary T cells from cord blood	blood
7	chr7:79812400-79827800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr7:79812400-79827800	Weak transcription	NHEK	skin
9	chr7:79812400-79828200	Weak transcription	HMEC	breast
10	chr7:79813400-79829000	Weak transcription	Fetal Muscle Leg	muscle
11	chr7:79813800-79828000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:79814200-79842600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:79815000-79830600	Weak transcription	Placenta	Placenta
14	chr7:79815000-79848200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:79815000-79850200	Weak transcription	Lung	lung
16	chr7:79815200-79859600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr7:79816200-79846800	Weak transcription	Esophagus	oesophagus
18	chr7:79816400-79854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:79816600-79826000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:79816800-79830600	Weak transcription	Gastric	stomach
21	chr7:79816800-79831800	Weak transcription	Hela-S3	cervix
22	chr7:79817000-79826600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:79817000-79828000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:79817000-79828600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:79817000-79829800	Weak transcription	Osteobl	bone
26	chr7:79817000-79830600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:79817000-79833000	Weak transcription	HSMM	muscle
28	chr7:79817000-79841000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:79817000-79842400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:79817000-79851200	Weak transcription	Aorta	Aorta
31	chr7:79817200-79826600	Weak transcription	Adipose Nuclei	Adipose
32	chr7:79817200-79828400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:79817200-79829200	Weak transcription	Fetal Brain Female	brain
34	chr7:79817200-79829200	Weak transcription	Fetal Stomach	stomach
35	chr7:79817400-79828600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:79817400-79828800	Weak transcription	Fetal Kidney	kidney
37	chr7:79817400-79829200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:79817600-79829200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr7:79818800-79826200	Weak transcription	Colon Smooth Muscle	Colon
40	chr7:79819000-79833200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:79819200-79830200	Weak transcription	Liver	Liver
42	chr7:79819400-79828600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:79820600-79829800	Weak transcription	Fetal Brain Male	brain
44	chr7:79820600-79830000	Weak transcription	NHDF-Ad	bronchial
45	chr7:79820600-79847000	Weak transcription	NHLF	lung
46	chr7:79820600-79853800	Weak transcription	Left Ventricle	heart
47	chr7:79821000-79829000	Weak transcription	Ovary	ovary
48	chr7:79821000-79829800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:79821200-79827800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr7:79821200-79828600	Weak transcription	Rectal Mucosa Donor 29	rectum

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