Variant report
| Variant | rs58702842 |
|---|---|
| Chromosome Location | chr7:79697681-79697682 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10232647 | 1.00[EUR][1000 genomes] |
| rs10237103 | 1.00[EUR][1000 genomes] |
| rs10244782 | 1.00[EUR][1000 genomes] |
| rs10252170 | 1.00[EUR][1000 genomes] |
| rs10259591 | 1.00[EUR][1000 genomes] |
| rs10265195 | 1.00[EUR][1000 genomes] |
| rs10265331 | 1.00[EUR][1000 genomes] |
| rs10279516 | 1.00[EUR][1000 genomes] |
| rs10279726 | 1.00[EUR][1000 genomes] |
| rs10429156 | 1.00[EUR][1000 genomes] |
| rs11981471 | 1.00[EUR][1000 genomes] |
| rs12113217 | 1.00[EUR][1000 genomes] |
| rs12113915 | 1.00[EUR][1000 genomes] |
| rs12721454 | 1.00[EUR][1000 genomes] |
| rs17153557 | 1.00[EUR][1000 genomes] |
| rs17153567 | 1.00[EUR][1000 genomes] |
| rs56213139 | 1.00[EUR][1000 genomes] |
| rs56266009 | 1.00[EUR][1000 genomes] |
| rs58015101 | 1.00[EUR][1000 genomes] |
| rs59069170 | 1.00[EUR][1000 genomes] |
| rs59148543 | 1.00[EUR][1000 genomes] |
| rs6949382 | 1.00[EUR][1000 genomes] |
| rs6956322 | 1.00[EUR][1000 genomes] |
| rs6966043 | 1.00[EUR][1000 genomes] |
| rs73374551 | 1.00[EUR][1000 genomes] |
| rs73374586 | 1.00[EUR][1000 genomes] |
| rs73374587 | 1.00[EUR][1000 genomes] |
| rs73376504 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73376514 | 1.00[EUR][1000 genomes] |
| rs73376517 | 1.00[EUR][1000 genomes] |
| rs73376520 | 1.00[EUR][1000 genomes] |
| rs73376532 | 1.00[EUR][1000 genomes] |
| rs73376537 | 1.00[EUR][1000 genomes] |
| rs73376566 | 1.00[EUR][1000 genomes] |
| rs73378618 | 1.00[EUR][1000 genomes] |
| rs73708332 | 1.00[EUR][1000 genomes] |
| rs7776592 | 1.00[EUR][1000 genomes] |
| rs7783639 | 1.00[EUR][1000 genomes] |
| rs7793962 | 1.00[EUR][1000 genomes] |
| rs7798923 | 1.00[EUR][1000 genomes] |
| rs7801052 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429785 | chr7:79589749-80177049 | Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv470344 | chr7:79659914-79701003 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv607678 | chr7:79665817-79726578 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1027494 | chr7:79693976-79760332 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:79695800-79707400 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr7:79696800-79707400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
