Variant report

Variant	rs73374586
Chromosome Location	chr7:79677384-79677385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:78216508..78217230-chr7:79676834..79677486,3	MCF-7	breast:
2	chr7:78926978..78927922-chr7:79676854..79677685,3	MCF-7	breast:
3	chr7:78901152..78901823-chr7:79676996..79677853,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10232647	1.00[EUR][1000 genomes]
rs10237103	1.00[EUR][1000 genomes]
rs10244782	1.00[EUR][1000 genomes]
rs10252170	1.00[EUR][1000 genomes]
rs10259591	1.00[EUR][1000 genomes]
rs10265195	1.00[EUR][1000 genomes]
rs10265331	1.00[EUR][1000 genomes]
rs10279516	1.00[EUR][1000 genomes]
rs10279726	1.00[EUR][1000 genomes]
rs10429156	1.00[EUR][1000 genomes]
rs11981471	1.00[EUR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[EUR][1000 genomes]
rs17153557	1.00[EUR][1000 genomes]
rs17153567	1.00[EUR][1000 genomes]
rs56213139	1.00[EUR][1000 genomes]
rs56266009	1.00[EUR][1000 genomes]
rs58015101	1.00[EUR][1000 genomes]
rs58702842	1.00[EUR][1000 genomes]
rs59069170	1.00[EUR][1000 genomes]
rs59148543	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6946197	0.81[AFR][1000 genomes]
rs6949382	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6956322	1.00[EUR][1000 genomes]
rs6966043	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73374551	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73374587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73376504	1.00[EUR][1000 genomes]
rs73376514	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73376517	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73376520	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73376532	1.00[EUR][1000 genomes]
rs73376537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73376566	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73376576	0.83[AFR][1000 genomes]
rs73376578	0.83[AFR][1000 genomes]
rs73376581	0.84[AFR][1000 genomes]
rs73378618	1.00[EUR][1000 genomes]
rs73708332	1.00[EUR][1000 genomes]
rs7776592	1.00[EUR][1000 genomes]
rs7783639	1.00[EUR][1000 genomes]
rs7793962	1.00[EUR][1000 genomes]
rs7798923	1.00[EUR][1000 genomes]
rs7801052	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607676	chr7:79636682-79687844	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv818527	chr7:79636682-79687844	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv607677	chr7:79636682-79693050	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv470344	chr7:79659914-79701003	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79676400-79678000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr7:79677200-79677600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links