Variant report

Variant	rs73378618
Chromosome Location	chr7:79762016-79762017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10232647	1.00[EUR][1000 genomes]
rs10237103	1.00[EUR][1000 genomes]
rs10244782	1.00[EUR][1000 genomes]
rs10252170	1.00[EUR][1000 genomes]
rs10259591	1.00[EUR][1000 genomes]
rs10265195	1.00[EUR][1000 genomes]
rs10265331	1.00[EUR][1000 genomes]
rs10279516	1.00[EUR][1000 genomes]
rs10429156	1.00[EUR][1000 genomes]
rs11981471	1.00[EUR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[EUR][1000 genomes]
rs17153557	1.00[EUR][1000 genomes]
rs17153567	1.00[EUR][1000 genomes]
rs56213139	1.00[EUR][1000 genomes]
rs56266009	1.00[EUR][1000 genomes]
rs58015101	1.00[EUR][1000 genomes]
rs58702842	1.00[EUR][1000 genomes]
rs59069170	1.00[EUR][1000 genomes]
rs59148543	1.00[EUR][1000 genomes]
rs6949382	1.00[EUR][1000 genomes]
rs6956322	1.00[EUR][1000 genomes]
rs6966043	1.00[EUR][1000 genomes]
rs73374551	1.00[EUR][1000 genomes]
rs73374586	1.00[EUR][1000 genomes]
rs73374587	1.00[EUR][1000 genomes]
rs73376504	1.00[EUR][1000 genomes]
rs73376514	1.00[EUR][1000 genomes]
rs73376517	1.00[EUR][1000 genomes]
rs73376520	1.00[EUR][1000 genomes]
rs73376532	1.00[EUR][1000 genomes]
rs73376537	1.00[EUR][1000 genomes]
rs73376566	1.00[EUR][1000 genomes]
rs73708332	1.00[EUR][1000 genomes]
rs7776592	1.00[EUR][1000 genomes]
rs7783639	1.00[EUR][1000 genomes]
rs7793962	1.00[EUR][1000 genomes]
rs7798923	1.00[EUR][1000 genomes]
rs7801052	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79757600-79763200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:79757600-79763400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:79757600-79763400	Weak transcription	Brain Germinal Matrix	brain
4	chr7:79757600-79763600	Weak transcription	Liver	Liver
5	chr7:79757800-79763400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr7:79758000-79763000	Weak transcription	Brain Substantia Nigra	brain
7	chr7:79758200-79762800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:79758200-79763200	Weak transcription	Brain Hippocampus Middle	brain
9	chr7:79758600-79763200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:79758800-79763000	Weak transcription	Placenta	Placenta
11	chr7:79759800-79763000	Weak transcription	HepG2	liver
12	chr7:79761000-79763200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:79761200-79763400	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr7:79761400-79762400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:79761400-79763600	Enhancers	Primary hematopoietic stem cells	blood
16	chr7:79761600-79762200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:79761600-79763000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:79761600-79763000	Enhancers	NHEK	skin
19	chr7:79761600-79763200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:79761600-79763400	Enhancers	HMEC	breast
21	chr7:79761600-79763600	Weak transcription	Psoas Muscle	Psoas
22	chr7:79761800-79762800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:79761800-79763200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:79761800-79763200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:79762000-79762200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:79762000-79762400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:79762000-79762400	Enhancers	Fetal Thymus	thymus
28	chr7:79762000-79763000	Enhancers	Primary T cells from cord blood	blood
29	chr7:79762000-79763200	Weak transcription	Fetal Muscle Leg	muscle
30	chr7:79762000-79763200	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links