Variant report

Variant	rs7801052
Chromosome Location	chr7:79774248-79774249
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10232647	1.00[EUR][1000 genomes]
rs10237103	1.00[EUR][1000 genomes]
rs10244782	1.00[EUR][1000 genomes]
rs10252170	1.00[EUR][1000 genomes]
rs10259591	1.00[EUR][1000 genomes]
rs10265195	1.00[EUR][1000 genomes]
rs10265331	1.00[EUR][1000 genomes]
rs10279516	1.00[EUR][1000 genomes]
rs10429156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11983471	1.00[AMR][1000 genomes]
rs12113217	1.00[EUR][1000 genomes]
rs12113915	1.00[EUR][1000 genomes]
rs12721454	1.00[EUR][1000 genomes]
rs17153557	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17153567	1.00[EUR][1000 genomes]
rs56213139	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56266009	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58015101	1.00[EUR][1000 genomes]
rs58702842	1.00[EUR][1000 genomes]
rs59069170	1.00[EUR][1000 genomes]
rs59148543	1.00[EUR][1000 genomes]
rs6949382	1.00[EUR][1000 genomes]
rs6956322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6966043	1.00[EUR][1000 genomes]
rs73374551	1.00[EUR][1000 genomes]
rs73374586	1.00[EUR][1000 genomes]
rs73374587	1.00[EUR][1000 genomes]
rs73376504	1.00[EUR][1000 genomes]
rs73376514	1.00[EUR][1000 genomes]
rs73376517	1.00[EUR][1000 genomes]
rs73376520	1.00[EUR][1000 genomes]
rs73376532	1.00[EUR][1000 genomes]
rs73376537	1.00[EUR][1000 genomes]
rs73376566	1.00[EUR][1000 genomes]
rs73378618	1.00[EUR][1000 genomes]
rs73708332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7776592	1.00[EUR][1000 genomes]
rs7783639	1.00[EUR][1000 genomes]
rs7793962	1.00[EUR][1000 genomes]
rs7798923	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79765600-79775200	Weak transcription	Esophagus	oesophagus
2	chr7:79766400-79775000	Weak transcription	NH-A	brain
3	chr7:79766400-79775200	Weak transcription	Left Ventricle	heart
4	chr7:79767200-79775200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:79767200-79775200	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:79768400-79775200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:79768400-79775200	Weak transcription	Aorta	Aorta
8	chr7:79768600-79780400	Weak transcription	Stomach Mucosa	stomach
9	chr7:79768800-79774800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:79768800-79775000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:79768800-79775200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:79768800-79775200	Weak transcription	Ovary	ovary
13	chr7:79768800-79780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:79768800-79780200	Weak transcription	Small Intestine	intestine
15	chr7:79769000-79775000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:79769000-79775000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:79769000-79775000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:79769000-79775000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr7:79769000-79775200	Enhancers	Adipose Nuclei	Adipose
20	chr7:79769200-79774600	Weak transcription	Hela-S3	cervix
21	chr7:79769600-79775600	Enhancers	Brain Substantia Nigra	brain
22	chr7:79770400-79775200	Weak transcription	HMEC	breast
23	chr7:79770600-79775000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:79770600-79775000	Enhancers	Fetal Lung	lung
25	chr7:79770600-79775000	Weak transcription	Gastric	stomach
26	chr7:79770600-79775400	Enhancers	Fetal Brain Male	brain
27	chr7:79770800-79779200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr7:79771000-79774600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:79771000-79775200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr7:79771200-79777600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:79771400-79775000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr7:79771600-79777600	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr7:79771800-79777800	Enhancers	Colon Smooth Muscle	Colon
34	chr7:79772000-79774600	Enhancers	A549	lung
35	chr7:79772000-79774800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:79772000-79776200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:79772200-79775000	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr7:79772200-79775000	Enhancers	Stomach Smooth Muscle	stomach
39	chr7:79772200-79776600	Enhancers	Fetal Brain Female	brain
40	chr7:79772200-79777600	Enhancers	Brain Hippocampus Middle	brain
41	chr7:79772400-79775200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:79772400-79777400	Enhancers	Rectal Smooth Muscle	rectum
43	chr7:79772800-79775000	Weak transcription	Fetal Kidney	kidney
44	chr7:79772800-79775000	Enhancers	NHEK	skin
45	chr7:79772800-79775200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:79772800-79780800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr7:79773000-79775200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr7:79773000-79775200	Weak transcription	Brain Anterior Caudate	brain
49	chr7:79773200-79774800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:79773200-79775000	Weak transcription	Liver	Liver

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