Variant report

Variant	rs73376576
Chromosome Location	chr7:79718865-79718866
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59148543	0.87[AFR][1000 genomes]
rs6946197	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6966043	0.86[AFR][1000 genomes]
rs73374551	0.81[AFR][1000 genomes]
rs73374586	0.83[AFR][1000 genomes]
rs73376514	0.86[AFR][1000 genomes]
rs73376517	0.83[AFR][1000 genomes]
rs73376520	0.83[AFR][1000 genomes]
rs73376537	0.84[AFR][1000 genomes]
rs73376566	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79716000-79720800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:79716600-79719200	Enhancers	Ovary	ovary
3	chr7:79716800-79719800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:79716800-79720400	Enhancers	NHEK	skin
5	chr7:79717000-79719600	Weak transcription	HMEC	breast
6	chr7:79717000-79720000	Enhancers	NHDF-Ad	bronchial
7	chr7:79717200-79719000	Enhancers	Colon Smooth Muscle	Colon
8	chr7:79717400-79719000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:79717400-79719800	Enhancers	NHLF	lung
10	chr7:79717400-79719800	Enhancers	Osteobl	bone
11	chr7:79717600-79719800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:79717600-79720800	Enhancers	Placenta	Placenta
13	chr7:79717800-79719400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr7:79717800-79720200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr7:79718000-79719400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:79718000-79719800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:79718200-79719400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:79718400-79719200	Weak transcription	Fetal Kidney	kidney
19	chr7:79718400-79719400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:79718400-79719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:79718400-79719400	Weak transcription	HSMMtube	muscle
22	chr7:79718400-79720200	Enhancers	Adipose Nuclei	Adipose
23	chr7:79718600-79719000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr7:79718800-79719800	Enhancers	Fetal Lung	lung
25	chr7:79718800-79720200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:79718800-79720400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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