Variant report

Variant	rs73376558
Chromosome Location	chr7:79708168-79708169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73376532	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73376561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv607678	chr7:79665817-79726578	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1027494	chr7:79693976-79760332	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79707200-79708200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:79707200-79708400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr7:79707400-79708200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:79707400-79708200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:79707400-79708200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr7:79707400-79708200	Active TSS	Liver	Liver
7	chr7:79707400-79708200	Active TSS	A549	lung
8	chr7:79707400-79708200	Flanking Active TSS	Osteobl	bone
9	chr7:79707400-79709600	Enhancers	Fetal Brain Male	brain
10	chr7:79707600-79708200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:79707600-79708200	Enhancers	Left Ventricle	heart
12	chr7:79707600-79708200	Flanking Active TSS	NHDF-Ad	bronchial
13	chr7:79707600-79716600	Weak transcription	Brain Substantia Nigra	brain
14	chr7:79707800-79708200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:79707800-79708200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:79707800-79708200	Enhancers	Primary hematopoietic stem cells	blood
17	chr7:79707800-79708200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:79707800-79708200	Enhancers	Fetal Brain Female	brain
19	chr7:79707800-79708200	Enhancers	Dnd41	blood
20	chr7:79707800-79708200	Flanking Active TSS	NHEK	skin
21	chr7:79708000-79708200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:79708000-79708200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:79708000-79708200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:79708000-79708200	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr7:79708000-79708200	Enhancers	NHLF	lung
26	chr7:79708000-79708400	Enhancers	Primary B cells from cord blood	blood
27	chr7:79708000-79708400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:79708000-79708400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr7:79708000-79708400	Enhancers	HMEC	breast
30	chr7:79708000-79708400	Enhancers	HUVEC	blood vessel
31	chr7:79708000-79711600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:79708000-79716800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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