Variant report

Variant	rs72612614
Chromosome Location	chr7:79876196-79876197
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10241540	0.82[ASN][1000 genomes]
rs17147931	0.83[ASN][1000 genomes]
rs17153598	0.94[ASN][1000 genomes]
rs6973017	1.00[ASN][1000 genomes]
rs72612609	0.94[ASN][1000 genomes]
rs72612610	1.00[ASN][1000 genomes]
rs72612611	1.00[ASN][1000 genomes]
rs72612612	1.00[ASN][1000 genomes]
rs72612613	1.00[ASN][1000 genomes]
rs72612615	1.00[ASN][1000 genomes]
rs72612616	1.00[ASN][1000 genomes]
rs72612618	0.82[ASN][1000 genomes]
rs7783639	0.94[ASN][1000 genomes]
rs7789551	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv517963	chr7:79874467-79887271	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79870600-79879200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:79874000-79876400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:79874000-79878400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:79874400-79876800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:79874600-79879000	Weak transcription	Brain Substantia Nigra	brain
6	chr7:79874800-79876200	Weak transcription	Fetal Muscle Leg	muscle
7	chr7:79874800-79878600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:79874800-79879000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:79874800-79879200	Weak transcription	Brain Angular Gyrus	brain
10	chr7:79874800-79879400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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