Variant report

Variant	rs17153507
Chromosome Location	chr7:79791793-79791794
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10435401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11983471	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17147931	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17153482	0.87[EUR][1000 genomes]
rs17153503	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17153506	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17153514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17153536	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17153598	0.83[ASN][1000 genomes]
rs72612609	0.83[ASN][1000 genomes]
rs7783639	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79776200-79796200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr7:79781200-79803200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:79781600-79794200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:79781600-79795200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:79781600-79797000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:79783200-79794000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:79783800-79806600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:79784000-79792000	Weak transcription	Fetal Kidney	kidney
9	chr7:79785600-79794400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:79786200-79791800	Weak transcription	Fetal Brain Male	brain
11	chr7:79786200-79794200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:79786200-79796600	Weak transcription	NHEK	skin
13	chr7:79786200-79799600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:79788000-79795200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:79788200-79792200	Enhancers	Adipose Nuclei	Adipose
16	chr7:79788400-79791800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:79788400-79792600	Weak transcription	Brain Angular Gyrus	brain
18	chr7:79788600-79799000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:79788600-79799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:79788800-79794600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:79788800-79796400	Weak transcription	Brain Anterior Caudate	brain
22	chr7:79789200-79791800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:79789400-79793000	Weak transcription	A549	lung
24	chr7:79789400-79814200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr7:79789600-79792800	Enhancers	Brain Hippocampus Middle	brain
26	chr7:79790000-79792000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr7:79790000-79793800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr7:79790200-79793200	Enhancers	Brain Cingulate Gyrus	brain
29	chr7:79790600-79793200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:79790600-79793400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:79791000-79792200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:79791200-79792200	Enhancers	Gastric	stomach
33	chr7:79791200-79792800	Enhancers	Primary hematopoietic stem cells	blood
34	chr7:79791200-79793000	Enhancers	Fetal Lung	lung
35	chr7:79791200-79794200	Weak transcription	Colon Smooth Muscle	Colon
36	chr7:79791200-79799400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:79791400-79791800	Weak transcription	Brain Substantia Nigra	brain
38	chr7:79791400-79792400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr7:79791600-79801400	Weak transcription	Ovary	ovary

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