Variant report

Variant	rs17153482
Chromosome Location	chr7:79767405-79767406
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79763311..79765795-chr7:79766136..79767729,2	K562	blood:

Variant related genes	Relation type
ENSG00000127955	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10435401	0.87[EUR][1000 genomes]
rs11983471	0.82[EUR][1000 genomes]
rs17153506	0.87[EUR][1000 genomes]
rs17153507	0.87[EUR][1000 genomes]
rs62460728	1.00[ASN][1000 genomes]
rs62460729	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79763800-79767600	Active TSS	Brain Cingulate Gyrus	brain
2	chr7:79765200-79769200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:79765400-79769800	Weak transcription	Gastric	stomach
4	chr7:79765600-79768200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:79765600-79768200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:79765600-79775200	Weak transcription	Esophagus	oesophagus
7	chr7:79766000-79768000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:79766000-79768000	Weak transcription	Aorta	Aorta
9	chr7:79766000-79768200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:79766000-79772600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:79766200-79768800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr7:79766200-79769000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:79766400-79767600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:79766400-79767800	Enhancers	HSMM	muscle
15	chr7:79766400-79768000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr7:79766400-79768000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr7:79766400-79768000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:79766400-79768000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:79766400-79768000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr7:79766400-79768000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:79766400-79768000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr7:79766400-79768000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:79766400-79768000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:79766400-79768000	Weak transcription	Osteobl	bone
25	chr7:79766400-79768200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:79766400-79768200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr7:79766400-79768200	Weak transcription	HUVEC	blood vessel
28	chr7:79766400-79768800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr7:79766400-79769200	Enhancers	Liver	Liver
30	chr7:79766400-79769200	Enhancers	Hela-S3	cervix
31	chr7:79766400-79770600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:79766400-79774200	Weak transcription	Right Atrium	heart
33	chr7:79766400-79775000	Weak transcription	NH-A	brain
34	chr7:79766400-79775200	Weak transcription	Left Ventricle	heart
35	chr7:79766600-79767600	Weak transcription	Brain Germinal Matrix	brain
36	chr7:79766600-79768000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:79766600-79768000	Weak transcription	Primary T cells from cord blood	blood
38	chr7:79766600-79768000	Weak transcription	Fetal Stomach	stomach
39	chr7:79766600-79768000	Enhancers	NHDF-Ad	bronchial
40	chr7:79766600-79768200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:79766600-79768200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr7:79766600-79768200	Weak transcription	Fetal Intestine Small	intestine
43	chr7:79766600-79768200	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr7:79766600-79768800	Enhancers	Rectal Smooth Muscle	rectum
45	chr7:79766600-79768800	Enhancers	NHLF	lung
46	chr7:79766600-79769000	Enhancers	Fetal Kidney	kidney
47	chr7:79766800-79768400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:79766800-79768600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:79767000-79767600	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr7:79767000-79767600	Flanking Active TSS	NHEK	skin

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