Variant report

Variant	rs62460729
Chromosome Location	chr7:79766896-79766897
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:79763311..79765795-chr7:79766136..79767729,2	K562	blood:

Variant related genes	Relation type
ENSG00000127955	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17153482	1.00[ASN][1000 genomes]
rs62460728	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788845	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79763200-79767000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr7:79763200-79767000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:79763400-79767000	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr7:79763400-79767400	Active TSS	Brain Angular Gyrus	brain
5	chr7:79763600-79767400	Active TSS	Brain Hippocampus Middle	brain
6	chr7:79763800-79767000	Active TSS	Brain Anterior Caudate	brain
7	chr7:79763800-79767000	Active TSS	Fetal Brain Male	brain
8	chr7:79763800-79767400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr7:79763800-79767600	Active TSS	Brain Cingulate Gyrus	brain
10	chr7:79764800-79767000	Active TSS	Fetal Brain Female	brain
11	chr7:79765200-79767200	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr7:79765200-79769200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:79765400-79767400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr7:79765400-79769800	Weak transcription	Gastric	stomach
15	chr7:79765600-79768200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:79765600-79768200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:79765600-79775200	Weak transcription	Esophagus	oesophagus
18	chr7:79766000-79767000	Enhancers	Placenta	Placenta
19	chr7:79766000-79768000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:79766000-79768000	Weak transcription	Aorta	Aorta
21	chr7:79766000-79768200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr7:79766000-79772600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr7:79766200-79767200	Enhancers	Fetal Intestine Large	intestine
24	chr7:79766200-79767200	Enhancers	Ovary	ovary
25	chr7:79766200-79768800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr7:79766200-79769000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:79766400-79767000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr7:79766400-79767000	Enhancers	Colon Smooth Muscle	Colon
29	chr7:79766400-79767000	Enhancers	Stomach Smooth Muscle	stomach
30	chr7:79766400-79767000	Active TSS	A549	lung
31	chr7:79766400-79767200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:79766400-79767200	Weak transcription	Brain Substantia Nigra	brain
33	chr7:79766400-79767200	Enhancers	Small Intestine	intestine
34	chr7:79766400-79767600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr7:79766400-79767800	Enhancers	HSMM	muscle
36	chr7:79766400-79768000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:79766400-79768000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:79766400-79768000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:79766400-79768000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:79766400-79768000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr7:79766400-79768000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr7:79766400-79768000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr7:79766400-79768000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:79766400-79768000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr7:79766400-79768000	Weak transcription	Osteobl	bone
46	chr7:79766400-79768200	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:79766400-79768200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr7:79766400-79768200	Weak transcription	HUVEC	blood vessel
49	chr7:79766400-79768800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr7:79766400-79769200	Enhancers	Liver	Liver

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