Variant report

Variant	rs7788845
Chromosome Location	chr7:79761787-79761788
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:79760668-79761873	SK-N-SH	brain:	n/a	n/a
2	PBX3	chr7:79760830-79761815	SK-N-SH	brain:	n/a	n/a
3	STAT3	chr7:79761578-79761804	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
GNAI1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62460728	0.91[AMR][1000 genomes]
rs62460729	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79754400-79762000	Weak transcription	Fetal Thymus	thymus
2	chr7:79757600-79763200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:79757600-79763400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:79757600-79763400	Weak transcription	Brain Germinal Matrix	brain
5	chr7:79757600-79763600	Weak transcription	Liver	Liver
6	chr7:79757800-79763400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:79758000-79763000	Weak transcription	Brain Substantia Nigra	brain
8	chr7:79758200-79762800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:79758200-79763200	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:79758600-79763200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:79758800-79763000	Weak transcription	Placenta	Placenta
12	chr7:79759800-79763000	Weak transcription	HepG2	liver
13	chr7:79760000-79762000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:79761000-79763200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:79761200-79761800	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:79761200-79762000	Enhancers	Hela-S3	cervix
17	chr7:79761200-79763400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr7:79761400-79762400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:79761400-79763600	Enhancers	Primary hematopoietic stem cells	blood
20	chr7:79761600-79762200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr7:79761600-79763000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:79761600-79763000	Enhancers	NHEK	skin
23	chr7:79761600-79763200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:79761600-79763400	Enhancers	HMEC	breast
25	chr7:79761600-79763600	Weak transcription	Psoas Muscle	Psoas

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