Variant report

Variant	rs62462829
Chromosome Location	chr7:71618699-71618700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10236976	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10251823	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11771504	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11773040	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11974003	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17352127	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17352148	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2107729	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34588557	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35188259	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4529346	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55910106	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56189838	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56371709	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57328457	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62462815	0.84[AFR][1000 genomes]
rs62462819	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62462820	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62462821	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62462826	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62462831	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62462832	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62462848	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62462850	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62462851	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62462852	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62462853	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6460704	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6949014	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6953252	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6957052	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6957074	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6962484	0.84[EUR][1000 genomes]
rs6963158	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6965847	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6969926	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73701676	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7780692	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7783238	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7783557	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7789624	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7791307	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7795523	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7797453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7798356	0.84[AFR][1000 genomes]
rs7798609	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7805399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7808318	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7810076	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv531373	chr7:71487076-71765613	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1034282	chr7:71531113-71876617	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1015848	chr7:71552185-71736068	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv538942	chr7:71552185-71736068	ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv831024	chr7:71569349-71735250	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1023496	chr7:71593461-71633053	Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv529620	chr7:71604785-71935721	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71614600-71619600	Enhancers	Brain Anterior Caudate	brain
2	chr7:71614600-71619800	Enhancers	Brain Substantia Nigra	brain
3	chr7:71615400-71619000	Enhancers	Pancreas	Pancrea
4	chr7:71615400-71619600	Enhancers	Brain Angular Gyrus	brain
5	chr7:71616000-71619200	Enhancers	Fetal Thymus	thymus
6	chr7:71616600-71618800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:71616600-71619200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:71617200-71618800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:71617200-71618800	Enhancers	Liver	Liver
10	chr7:71617600-71619200	Enhancers	Primary hematopoietic stem cells	blood
11	chr7:71617800-71619000	Enhancers	Thymus	Thymus
12	chr7:71617800-71619600	Enhancers	Brain Cingulate Gyrus	brain
13	chr7:71618400-71618800	Enhancers	HepG2	liver
14	chr7:71618400-71619000	Enhancers	Dnd41	blood
15	chr7:71618400-71619800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr7:71618600-71618800	Flanking Active TSS	Brain Hippocampus Middle	brain

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