Variant report

Variant	rs6957052
Chromosome Location	chr7:71588682-71588683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:71586492..71588717-chr7:71593112..71596072,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10236976	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10251823	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11771504	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11773040	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11974003	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12699121	0.84[CEU][hapmap]
rs17352127	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17352148	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2107729	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34588557	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35188259	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4529346	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55910106	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56189838	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56371709	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57328457	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62462819	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62462820	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62462821	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62462826	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62462829	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62462831	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62462832	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62462848	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62462850	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62462851	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62462852	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62462853	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6460704	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6949014	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6953252	1.00[CEU][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6957074	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6962484	0.82[EUR][1000 genomes]
rs6963158	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6965847	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6969926	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73701676	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7780692	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7783238	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7783557	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7789624	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7791307	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7795523	1.00[CEU][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7797453	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7798356	0.88[CEU][hapmap];0.92[MEX][hapmap]
rs7798609	0.96[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7805399	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7808318	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7810076	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs844713	0.84[CEU][hapmap]
rs844720	0.83[CEU][hapmap]
rs844722	0.83[CEU][hapmap]
rs844723	0.87[CEU][hapmap]
rs844724	0.83[CEU][hapmap]
rs844727	0.84[CEU][hapmap]
rs844741	0.83[CEU][hapmap]
rs844747	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026896	chr7:71003462-71721516	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv916220	chr7:71200006-71708048	Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531372	chr7:71300090-71909517	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv491610	chr7:71422560-71803630	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv531373	chr7:71487076-71765613	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv817506	chr7:71488542-71935721	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv1034282	chr7:71531113-71876617	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1015848	chr7:71552185-71736068	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv538942	chr7:71552185-71736068	ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv831024	chr7:71569349-71735250	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:71581600-71594600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr7:71582200-71589000	Weak transcription	Pancreas	Pancrea
3	chr7:71586000-71589000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:71588000-71589200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:71588200-71596000	Weak transcription	Fetal Thymus	thymus
6	chr7:71588200-71603800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links