Variant report

Variant	rs62463669
Chromosome Location	chr7:101363129-101363130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101360494..101364353-chr7:101457066..101461812,6	MCF-7	breast:
2	chr7:101360591..101363401-chr7:101364095..101366139,2	MCF-7	breast:
3	chr7:101361354..101363333-chr7:101364363..101366054,2	K562	blood:
4	chr7:101358313..101363414-chr7:101457300..101460458,5	MCF-7	breast:
5	chr7:101353778..101358971-chr7:101359540..101363864,5	MCF-7	breast:
6	chr7:101360472..101364691-chr7:101369638..101374194,4	K562	blood:
7	chr7:101360823..101364160-chr7:101364363..101367581,3	K562	blood:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10270145	0.82[AMR][1000 genomes]
rs10278430	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11771998	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11772618	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1636441	0.82[AMR][1000 genomes]
rs2529183	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4276617	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4436052	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4535653	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4602818	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4642556	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56381219	0.86[EUR][1000 genomes]
rs60702821	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62463667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62463668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62463670	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62463671	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62463672	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62463674	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62463675	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62463676	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62463677	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62463717	1.00[AFR][1000 genomes]
rs62466310	0.82[AMR][1000 genomes]
rs62466312	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62466345	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62466346	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62466347	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62466348	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62466349	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62466350	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62466351	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62466354	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62466355	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs62466356	0.80[EUR][1000 genomes]
rs62466357	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62466358	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62467460	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62467463	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62467464	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62467465	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62467466	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62467468	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62467469	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs757820	0.82[AMR][1000 genomes]
rs757821	0.82[AMR][1000 genomes]
rs757822	0.82[AMR][1000 genomes]
rs7785622	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7796161	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7811421	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
2	chr7:101359800-101364200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:101360600-101364800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:101360600-101365600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:101360600-101365600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:101360600-101366600	Enhancers	Fetal Intestine Large	intestine
7	chr7:101360800-101365000	Enhancers	Fetal Thymus	thymus
8	chr7:101361200-101363600	Weak transcription	Spleen	Spleen
9	chr7:101361800-101365400	Weak transcription	Colonic Mucosa	Colon
10	chr7:101362000-101365400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:101362200-101363600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:101362200-101365200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:101362400-101363400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:101362400-101363600	Weak transcription	Thymus	Thymus
15	chr7:101362400-101364200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr7:101362400-101365400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:101363000-101363800	Enhancers	Fetal Intestine Small	intestine

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