Variant report

Variant	rs7796161
Chromosome Location	chr7:101375716-101375717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:101375406..101379067-chr7:101385960..101390621,6	MCF-7	breast:
2	chr7:101374945..101377506-chr7:101385778..101388397,3	K562	blood:
3	chr7:101374945..101377549-chr7:101385778..101388199,3	K562	blood:
4	chr7:101374726..101377337-chr7:101458849..101460414,2	MCF-7	breast:
5	chr7:101369100..101373067-chr7:101374919..101378261,3	K562	blood:
6	chr7:101341881..101343718-chr7:101375300..101377318,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257923	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10278430	0.91[EUR][1000 genomes]
rs11771998	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11772618	1.00[AFR][1000 genomes]
rs2529183	1.00[AFR][1000 genomes]
rs4276617	1.00[AFR][1000 genomes]
rs4436052	1.00[AFR][1000 genomes]
rs4535653	1.00[AFR][1000 genomes]
rs4602818	1.00[AFR][1000 genomes]
rs4642556	1.00[AFR][1000 genomes]
rs60702821	0.91[EUR][1000 genomes]
rs62463667	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62463668	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62463669	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62463670	0.91[EUR][1000 genomes]
rs62463671	0.91[EUR][1000 genomes]
rs62463672	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62463674	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62463675	0.91[EUR][1000 genomes]
rs62463676	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs62463677	0.91[EUR][1000 genomes]
rs62463717	1.00[AFR][1000 genomes]
rs62466345	1.00[AFR][1000 genomes]
rs62466346	1.00[AFR][1000 genomes]
rs62466347	1.00[AFR][1000 genomes]
rs62466348	1.00[AFR][1000 genomes]
rs62466349	1.00[AFR][1000 genomes]
rs62466351	1.00[AFR][1000 genomes]
rs62466354	1.00[AFR][1000 genomes]
rs62466355	1.00[AFR][1000 genomes]
rs62466357	1.00[AFR][1000 genomes]
rs62466358	1.00[AFR][1000 genomes]
rs62467460	1.00[AFR][1000 genomes]
rs62467463	1.00[AFR][1000 genomes]
rs62467464	1.00[AFR][1000 genomes]
rs62467465	1.00[AFR][1000 genomes]
rs62467466	1.00[AFR][1000 genomes]
rs62467468	1.00[AFR][1000 genomes]
rs62467469	1.00[AFR][1000 genomes]
rs7785622	1.00[AFR][1000 genomes]
rs7811421	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv1018544	chr7:101225639-101424889	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv539045	chr7:101225639-101424889	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv482758	chr7:101231458-101395219	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv831079	chr7:101273495-101466776	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1021797	chr7:101342353-101466957	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv539046	chr7:101342353-101466957	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
8	nsv1024319	chr7:101368299-101668159	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
9	nsv539047	chr7:101368299-101668159	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101332000-101376800	Weak transcription	Right Atrium	heart
2	chr7:101364800-101382400	Weak transcription	Thymus	Thymus
3	chr7:101369600-101377400	Weak transcription	Spleen	Spleen
4	chr7:101371600-101376600	Weak transcription	GM12878-XiMat	blood
5	chr7:101371600-101376800	Weak transcription	Primary B cells from cord blood	blood
6	chr7:101372400-101376600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:101372400-101376600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:101372400-101376800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr7:101372800-101376200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:101373000-101376800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:101373000-101376800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:101373200-101376800	Weak transcription	Lung	lung
13	chr7:101373400-101376000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr7:101373400-101376600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:101373400-101376800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:101373400-101376800	Weak transcription	Colonic Mucosa	Colon
17	chr7:101373400-101376800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr7:101373600-101376400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr7:101373600-101376800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr7:101373600-101376800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr7:101373600-101376800	Weak transcription	Fetal Intestine Small	intestine
22	chr7:101373600-101376800	Weak transcription	Placenta	Placenta
23	chr7:101373600-101376800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:101373600-101376800	Weak transcription	HSMM	muscle
25	chr7:101373600-101376800	Weak transcription	HSMMtube	muscle
26	chr7:101373600-101376800	Weak transcription	K562	blood
27	chr7:101373600-101376800	Weak transcription	Osteobl	bone
28	chr7:101373800-101376800	Weak transcription	Stomach Mucosa	stomach
29	chr7:101374200-101376800	Weak transcription	Fetal Intestine Large	intestine
30	chr7:101374400-101382800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr7:101375400-101376800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:101375400-101376800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr7:101375400-101376800	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:101375400-101376800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr7:101375400-101376800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:101375400-101376800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr7:101375400-101376800	Weak transcription	Hela-S3	cervix
38	chr7:101375600-101376800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr7:101375600-101376800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr7:101375600-101376800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr7:101375600-101376800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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