Variant report

Variant	rs62468020
Chromosome Location	chr7:107668365-107668366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11766582	1.00[AFR][1000 genomes]
rs62468016	1.00[AFR][1000 genomes]
rs73193730	1.00[AFR][1000 genomes]
rs73193751	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831088	chr7:107497100-107693680	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107655200-107670000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr7:107658800-107671200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:107664000-107669800	Weak transcription	NHLF	lung
4	chr7:107667200-107668400	Enhancers	Rectal Smooth Muscle	rectum
5	chr7:107667200-107668600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:107667400-107668400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr7:107667400-107670200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:107667600-107669800	Weak transcription	NH-A	brain
9	chr7:107667800-107669400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:107667800-107671200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:107668000-107669800	Weak transcription	NHDF-Ad	bronchial
12	chr7:107668000-107670000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:107668000-107670200	Weak transcription	HSMM	muscle
14	chr7:107668200-107668600	Weak transcription	Osteobl	bone
15	chr7:107668200-107670000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:107668200-107670600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:107668200-107670600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:107668200-107671400	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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