Variant report

Variant	rs73193751
Chromosome Location	chr7:107549550-107549551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:107543323..107547744-chr7:107549323..107553952,8	K562	blood:
2	chr7:107549453..107552437-chr7:107558201..107560787,2	MCF-7	breast:
3	chr7:107549211..107551973-chr7:107553723..107557280,3	K562	blood:

Variant related genes	Relation type
ENSG00000091140	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62468016	1.00[AFR][1000 genomes]
rs62468020	1.00[AFR][1000 genomes]
rs73193730	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831088	chr7:107497100-107693680	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107532600-107557600	Weak transcription	Aorta	Aorta
2	chr7:107532800-107557600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:107532800-107564800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:107532800-107572600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:107533200-107565600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:107533600-107557800	Weak transcription	Small Intestine	intestine
7	chr7:107537000-107557400	Weak transcription	Pancreas	Pancrea
8	chr7:107537000-107557600	Weak transcription	Esophagus	oesophagus
9	chr7:107537000-107557800	Weak transcription	Spleen	Spleen
10	chr7:107537000-107558400	Weak transcription	Lung	lung
11	chr7:107540400-107562200	Strong transcription	K562	blood
12	chr7:107541000-107562400	Strong transcription	Dnd41	blood
13	chr7:107541000-107577200	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr7:107541200-107564800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:107541600-107550400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:107541800-107560400	Strong transcription	Primary hematopoietic stem cells	blood
17	chr7:107542000-107554200	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr7:107542000-107560600	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:107542200-107553000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:107542200-107553000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr7:107542200-107553200	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr7:107542200-107553600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr7:107542200-107554400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:107542200-107561600	Strong transcription	Primary B cells from cord blood	blood
25	chr7:107542400-107551800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:107542400-107554600	Strong transcription	GM12878-XiMat	blood
27	chr7:107542400-107561000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:107542600-107554400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:107542800-107551600	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr7:107542800-107552000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:107542800-107552200	Strong transcription	Hela-S3	cervix
32	chr7:107542800-107553000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:107542800-107553400	Strong transcription	Primary T cells from cord blood	blood
34	chr7:107542800-107553600	Strong transcription	Duodenum Mucosa	Duodenum
35	chr7:107542800-107553800	Strong transcription	Fetal Thymus	thymus
36	chr7:107542800-107554400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:107542800-107560800	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr7:107543000-107550800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr7:107543000-107552800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr7:107543000-107553000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr7:107543000-107553600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr7:107543000-107553800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:107543000-107554800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr7:107543000-107556000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr7:107543000-107571800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr7:107543000-107572600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr7:107543200-107552800	Strong transcription	HepG2	liver
48	chr7:107543200-107553600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr7:107543400-107552600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:107543400-107552800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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