Variant report

Variant	rs62481155
Chromosome Location	chr7:128157646-128157647
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128155554..128158728-chr7:128169520..128173367,3	K562	blood:

Variant related genes	Relation type
ENSG00000242588	Chromatin interaction
ENSG00000273270	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10954186	0.85[EUR][1000 genomes]
rs11973151	0.87[EUR][1000 genomes]
rs11978885	0.81[ASN][1000 genomes]
rs12669878	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12670251	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12671391	0.85[EUR][1000 genomes]
rs12671449	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12671633	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12673746	0.92[EUR][1000 genomes]
rs34648097	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34682318	0.83[EUR][1000 genomes]
rs4448212	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4731485	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55744429	0.85[EUR][1000 genomes]
rs56199722	0.83[AFR][1000 genomes]
rs56329212	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57968683	0.85[EUR][1000 genomes]
rs58210776	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59475830	0.82[AMR][1000 genomes]
rs59955357	0.82[AMR][1000 genomes]
rs60796599	0.81[EUR][1000 genomes]
rs61479217	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62481136	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62481142	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62481158	0.81[EUR][1000 genomes]
rs62483260	0.80[EUR][1000 genomes]
rs62483264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62483265	0.85[EUR][1000 genomes]
rs62483267	0.84[EUR][1000 genomes]
rs62483269	0.83[EUR][1000 genomes]
rs62483273	0.82[EUR][1000 genomes]
rs62483274	0.84[EUR][1000 genomes]
rs62483275	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62483276	0.85[EUR][1000 genomes]
rs62483280	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62483285	0.85[EUR][1000 genomes]
rs62483299	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62483349	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62483350	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6946411	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6973650	0.82[EUR][1000 genomes]
rs7783334	0.83[EUR][1000 genomes]
rs7799914	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7809300	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs62481155	RP11-274B21.4	cis	Adipose Subcutaneous	GTEx
rs62481155	RP11-274B21.4	cis	Whole Blood	GTEx
rs62481155	RP11-274B21.1	cis	Adipose Subcutaneous	GTEx
rs62481155	RP11-274B21.2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:128153200-128163200	Weak transcription	K562	blood
6	chr7:128156800-128157800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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