Variant report

Variant	rs7783334
Chromosome Location	chr7:128167409-128167410
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128166139..128167875-chr7:128169519..128172145,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273270	Chromatin interaction
ENSG00000242588	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10085580	0.80[ASN][1000 genomes]
rs10243137	0.82[ASN][1000 genomes]
rs10464537	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10464538	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12667202	0.81[ASN][1000 genomes]
rs12670251	0.81[EUR][1000 genomes]
rs12671391	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34648097	0.80[EUR][1000 genomes]
rs34682318	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55660721	0.82[ASN][1000 genomes]
rs55744429	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56030011	0.81[ASN][1000 genomes]
rs56208431	0.81[ASN][1000 genomes]
rs57754703	0.82[ASN][1000 genomes]
rs57968683	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60473286	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs60781570	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs60796599	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62481155	0.83[EUR][1000 genomes]
rs62481158	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62483260	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62483261	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62483264	0.83[EUR][1000 genomes]
rs62483265	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62483267	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62483268	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62483269	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62483272	0.84[EUR][1000 genomes]
rs62483273	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62483274	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62483275	0.82[EUR][1000 genomes]
rs62483276	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62483280	0.81[EUR][1000 genomes]
rs62483286	0.82[ASN][1000 genomes]
rs62483298	0.81[ASN][1000 genomes]
rs62483302	0.81[ASN][1000 genomes]
rs7799914	0.80[EUR][1000 genomes]
rs7809300	0.80[EUR][1000 genomes]
rs9641823	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs9641824	0.81[ASN][1000 genomes]
rs9641826	0.84[ASN][1000 genomes]
rs9641827	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7783334	RP11-274B21.1	cis	Artery Tibial	GTEx
rs7783334	RP11-274B21.9	cis	Esophagus Mucosa	GTEx
rs7783334	RP11-274B21.4	cis	Nerve Tibial	GTEx
rs7783334	RP11-274B21.1	cis	lung	GTEx
rs7783334	RP11-274B21.2	cis	Adipose Subcutaneous	GTEx
rs7783334	RP11-274B21.4	cis	Whole Blood	GTEx
rs7783334	RP11-274B21.4	cis	Adipose Subcutaneous	GTEx
rs7783334	RP11-274B21.1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128163600-128169600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:128163600-128169800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:128163600-128169800	Weak transcription	Psoas Muscle	Psoas
4	chr7:128163600-128170400	Weak transcription	Lung	lung
5	chr7:128163800-128169200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:128163800-128169600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr7:128163800-128169600	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:128163800-128169800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:128163800-128169800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:128163800-128169800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:128163800-128169800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:128163800-128169800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr7:128163800-128169800	Weak transcription	Brain Anterior Caudate	brain
14	chr7:128163800-128169800	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:128163800-128169800	Weak transcription	Fetal Stomach	stomach
16	chr7:128163800-128169800	Weak transcription	Left Ventricle	heart
17	chr7:128163800-128169800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr7:128163800-128169800	Weak transcription	Small Intestine	intestine
19	chr7:128163800-128169800	Weak transcription	Dnd41	blood
20	chr7:128163800-128169800	Weak transcription	GM12878-XiMat	blood
21	chr7:128163800-128170000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:128163800-128170000	Weak transcription	Brain Substantia Nigra	brain
23	chr7:128163800-128170000	Weak transcription	Stomach Mucosa	stomach
24	chr7:128163800-128170000	Weak transcription	NH-A	brain
25	chr7:128163800-128170200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:128163800-128170200	Weak transcription	Fetal Thymus	thymus
27	chr7:128164000-128169200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:128164000-128169800	Weak transcription	Adipose Nuclei	Adipose
29	chr7:128164000-128169800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:128164000-128170200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:128164200-128169200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:128164200-128169800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:128164200-128169800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:128164200-128169800	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr7:128164400-128169600	Weak transcription	Brain Hippocampus Middle	brain
36	chr7:128164400-128169800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:128164400-128169800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:128164400-128169800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:128164400-128169800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:128164400-128169800	Weak transcription	Pancreas	Pancrea
41	chr7:128164400-128169800	Weak transcription	K562	blood
42	chr7:128164400-128170000	Weak transcription	Fetal Lung	lung
43	chr7:128164400-128170000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr7:128164400-128170000	Weak transcription	Hela-S3	cervix
45	chr7:128164400-128170200	Weak transcription	Colonic Mucosa	Colon
46	chr7:128164400-128170200	Weak transcription	Fetal Intestine Large	intestine
47	chr7:128164400-128170200	Weak transcription	Fetal Intestine Small	intestine
48	chr7:128164400-128170200	Weak transcription	Fetal Muscle Trunk	muscle
49	chr7:128164400-128170400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr7:128164600-128169600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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