Variant report

Variant	rs62482546
Chromosome Location	chr7:107112439-107112440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107111916..107113727-chr7:107113763..107116184,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4727676	0.96[EUR][1000 genomes]
rs62482510	1.00[AFR][1000 genomes]
rs62483681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62483728	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6959079	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv1019963	chr7:107033342-107188641	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv539052	chr7:107033342-107188641	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107035800-107133000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:107052600-107126400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:107067600-107119800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:107083400-107115400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:107088600-107126000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:107090000-107114600	Weak transcription	Primary T cells from cord blood	blood
7	chr7:107090800-107146000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:107091000-107145800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:107098800-107132600	Weak transcription	Primary B cells from cord blood	blood
10	chr7:107104200-107118000	Weak transcription	NHEK	skin
11	chr7:107104200-107121000	Weak transcription	K562	blood
12	chr7:107110200-107112600	Active TSS	Fetal Heart	heart
13	chr7:107110200-107115400	Active TSS	Fetal Brain Male	brain
14	chr7:107110200-107117400	Active TSS	Fetal Brain Female	brain
15	chr7:107110400-107115600	Active TSS	Brain Cingulate Gyrus	brain
16	chr7:107110400-107115800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr7:107110800-107112600	Active TSS	Brain Anterior Caudate	brain
18	chr7:107110800-107112600	Active TSS	Brain Hippocampus Middle	brain
19	chr7:107110800-107112600	Weak transcription	Left Ventricle	heart
20	chr7:107110800-107115400	Active TSS	Brain Angular Gyrus	brain
21	chr7:107110800-107115800	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr7:107111000-107112600	Weak transcription	Brain Substantia Nigra	brain
23	chr7:107111000-107112600	Weak transcription	Right Ventricle	heart
24	chr7:107111000-107115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:107111800-107113000	Enhancers	HUVEC	blood vessel
26	chr7:107111800-107113000	Enhancers	NHLF	lung
27	chr7:107111800-107114000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:107111800-107115800	Active TSS	Right Atrium	heart
29	chr7:107112000-107112800	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr7:107112000-107112800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr7:107112000-107114000	Enhancers	NHDF-Ad	bronchial
32	chr7:107112200-107113000	Enhancers	Fetal Lung	lung
33	chr7:107112200-107113200	Enhancers	Muscle Satellite Cultured Cells	--
34	chr7:107112200-107120800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:107112400-107113200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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