Variant report

Variant	rs62483728
Chromosome Location	chr7:107235087-107235088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107219336..107222149-chr7:107234347..107238081,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272854	Chromatin interaction
ENSG00000075790	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62482546	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62483681	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9691194	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107221200-107237400	Weak transcription	Esophagus	oesophagus
2	chr7:107221200-107272000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:107221400-107235200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:107221400-107235400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:107221400-107237400	Weak transcription	Pancreas	Pancrea
6	chr7:107221400-107253800	Weak transcription	Ovary	ovary
7	chr7:107221400-107254200	Weak transcription	Thymus	Thymus
8	chr7:107221400-107256400	Weak transcription	Lung	lung
9	chr7:107221400-107272400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:107221400-107276000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:107221600-107254200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr7:107221800-107237200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:107221800-107243200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:107221800-107243400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:107221800-107249400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:107222000-107235200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr7:107222000-107235400	Weak transcription	HSMMtube	muscle
18	chr7:107222000-107242000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:107222400-107235400	Weak transcription	Fetal Kidney	kidney
20	chr7:107222400-107241600	Weak transcription	Colonic Mucosa	Colon
21	chr7:107222400-107242200	Weak transcription	HepG2	liver
22	chr7:107222400-107258200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr7:107222600-107237600	Weak transcription	Psoas Muscle	Psoas
24	chr7:107223000-107254400	Weak transcription	Brain Germinal Matrix	brain
25	chr7:107223200-107240400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr7:107223400-107256800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr7:107223600-107235400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:107223600-107235400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr7:107223600-107235400	Weak transcription	Right Atrium	heart
30	chr7:107223600-107235600	Weak transcription	Brain Substantia Nigra	brain
31	chr7:107223600-107254400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr7:107223600-107256600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr7:107223800-107235400	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr7:107225200-107235200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:107225400-107235400	Weak transcription	Fetal Brain Female	brain
36	chr7:107225600-107254000	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:107226000-107235200	Weak transcription	Hela-S3	cervix
38	chr7:107226200-107235400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:107226200-107235400	Weak transcription	GM12878-XiMat	blood
40	chr7:107226200-107254000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:107226800-107235200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr7:107226800-107254200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:107226800-107254800	Weak transcription	Fetal Thymus	thymus
44	chr7:107227000-107235200	Weak transcription	Dnd41	blood
45	chr7:107227200-107235200	Weak transcription	NH-A	brain
46	chr7:107227200-107235200	Weak transcription	NHLF	lung
47	chr7:107227600-107235200	Weak transcription	Primary B cells from cord blood	blood
48	chr7:107227600-107235200	Weak transcription	Fetal Intestine Large	intestine
49	chr7:107227600-107237400	Weak transcription	Gastric	stomach
50	chr7:107227800-107235200	Weak transcription	Rectal Mucosa Donor 31	rectum

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