Variant report

Variant	rs62483619
Chromosome Location	chr7:106796537-106796538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106649275..106650876-chr7:106794605..106796964,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12670688	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12672451	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13230144	0.82[AMR][1000 genomes]
rs17153981	0.80[EUR][1000 genomes]
rs2107317	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2237659	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237660	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237661	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2237662	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2237665	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2283038	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2301801	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2395868	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34021916	0.80[AMR][1000 genomes]
rs3801964	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3801966	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62483623	0.81[AMR][1000 genomes]
rs62483627	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62483629	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62483633	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62483634	0.81[EUR][1000 genomes]
rs62483640	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62483641	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7803151	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106760400-106808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:106763000-106807800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:106767400-106797600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:106778400-106807800	Weak transcription	Brain Germinal Matrix	brain
5	chr7:106780000-106807800	Weak transcription	Fetal Heart	heart
6	chr7:106782600-106808000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:106782800-106807800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr7:106783600-106807600	Weak transcription	Fetal Stomach	stomach
9	chr7:106784200-106802600	Strong transcription	K562	blood
10	chr7:106785400-106808000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr7:106785800-106807600	Weak transcription	Fetal Kidney	kidney
12	chr7:106787400-106805800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:106788000-106805800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:106788000-106808000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr7:106788200-106807600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:106788400-106808000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:106788600-106805800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:106788800-106797200	Weak transcription	Placenta	Placenta
19	chr7:106788800-106797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr7:106788800-106805800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:106788800-106807200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:106788800-106807600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:106788800-106807800	Weak transcription	Ovary	ovary
24	chr7:106789400-106808200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:106790000-106807200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:106790800-106797800	Weak transcription	Spleen	Spleen
27	chr7:106791000-106799400	Weak transcription	HUVEC	blood vessel
28	chr7:106791000-106805600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr7:106791000-106806800	Weak transcription	Fetal Intestine Large	intestine
30	chr7:106791000-106807600	Weak transcription	Brain Anterior Caudate	brain
31	chr7:106791200-106799400	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:106791200-106807800	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr7:106792200-106808400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr7:106792800-106797600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:106793000-106797400	Weak transcription	Fetal Brain Female	brain
36	chr7:106793000-106804000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:106794000-106807200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr7:106794000-106808200	Weak transcription	Left Ventricle	heart
39	chr7:106795000-106798400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:106795600-106808400	Weak transcription	Gastric	stomach
41	chr7:106795800-106797400	Weak transcription	Adipose Nuclei	Adipose
42	chr7:106796000-106797200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:106796000-106797600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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