Variant report

Variant	rs2237665
Chromosome Location	chr7:106906998-106906999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106902439..106904593-chr7:106905205..106907557,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10234355	0.94[CHB][hapmap]
rs12112877	0.92[ASN][1000 genomes]
rs12667527	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12670688	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12672451	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13230144	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17153981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17154040	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17154091	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs1858888	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2107317	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2237658	0.88[ASN][1000 genomes]
rs2237659	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2237660	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2237661	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2237662	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2237668	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2283038	0.90[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2301801	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2395868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395869	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34021916	0.85[ASN][1000 genomes]
rs3801964	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3801966	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4727680	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4727681	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs4730235	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4730237	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4730238	0.83[EUR][1000 genomes]
rs4730245	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs58391518	0.83[ASN][1000 genomes]
rs62482493	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62482495	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62482499	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62482502	0.87[ASN][1000 genomes]
rs62482503	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62482507	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62483619	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62483627	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62483629	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62483633	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62483634	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62483640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62483641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6949634	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7777950	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7785892	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7788271	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7788330	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7790080	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7803151	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9791733	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs982447	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs986994	0.94[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2756226	chr7:106850755-106944563	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv1016691	chr7:106880953-106960515	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1015615	chr7:106888529-106962332	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1024903	chr7:106897237-106965091	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1034707	chr7:106897237-106966215	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1033064	chr7:106903099-106949640	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106846000-106925800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:106851000-106946000	Weak transcription	Esophagus	oesophagus
3	chr7:106853400-106925600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:106866600-106909600	Weak transcription	Placenta	Placenta
5	chr7:106874000-106917800	Weak transcription	Osteobl	bone
6	chr7:106874000-106922600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:106874000-106929200	Weak transcription	NH-A	brain
8	chr7:106874000-106945600	Weak transcription	Pancreas	Pancrea
9	chr7:106875400-106908000	Weak transcription	HMEC	breast
10	chr7:106883000-106918800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:106883400-106910200	Weak transcription	Lung	lung
12	chr7:106883400-106911400	Weak transcription	Right Ventricle	heart
13	chr7:106886400-106971400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:106886800-106946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:106887000-106935800	Weak transcription	Small Intestine	intestine
16	chr7:106887600-106910200	Weak transcription	Adipose Nuclei	Adipose
17	chr7:106887600-106910400	Weak transcription	Psoas Muscle	Psoas
18	chr7:106888600-106910000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:106888600-106926600	Weak transcription	Ovary	ovary
20	chr7:106888600-106930800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:106888600-106931600	Weak transcription	Dnd41	blood
22	chr7:106888800-106910200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr7:106888800-106910200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:106888800-106910200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr7:106888800-106911400	Weak transcription	Fetal Intestine Small	intestine
26	chr7:106888800-106913200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr7:106888800-106917400	Weak transcription	HSMM	muscle
28	chr7:106888800-106930800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:106888800-106932000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr7:106888800-106933400	Weak transcription	Fetal Stomach	stomach
31	chr7:106888800-106946000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:106888800-106946200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr7:106888800-106999400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr7:106889000-106910200	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:106889000-106933400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:106889000-106934400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr7:106889200-106910200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr7:106889200-106914800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr7:106889200-106922600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:106889600-106920400	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr7:106889800-106909800	Weak transcription	Fetal Intestine Large	intestine
42	chr7:106890800-106909000	Weak transcription	Primary T cells from cord blood	blood
43	chr7:106890800-106921800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:106890800-106945600	Weak transcription	Aorta	Aorta
45	chr7:106891000-106923000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr7:106891000-106931000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr7:106892800-106918200	Weak transcription	Gastric	stomach
48	chr7:106893400-106922800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr7:106894400-106910400	Weak transcription	Left Ventricle	heart
50	chr7:106894600-106910200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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